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[180767_at]

Description C06G3.4 /REP_DB=WormBase Gene ID /WP=CE07980 /TR=Q17748 /GB=AAB03134.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 32
(-1.6)
A 		18.7
(-2.9)
A 		18.1
(-3)
A 		79.4
(3)
A 		61
B 19.9
(-2.1)
A 		16.4
(-3)
A 		39.1
(3)
A 		22.1
(-1.5)
A 		23
C 37.3
(-0.4)
A 		30.2
(-0.9)
A 		2.2
(-3)
A 		83.8
(3)
P 		82
avr 29.7
(-1.6) 		21.8
(-2.7) 		19.8
(-3) 		61.8
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 42.5
(3)
A 		10.6
(-3)
A 		42.2
(2.9)
A 		12.9
(-2.6)
A 		19.1
(-1.4)
A 		39.9
(2.5)
P 		32
B 36.1
(0.2)
A 		11.6
(-3)
A 		19.1
(-2)
A 		58
(3)
A 		16.8
(-2.3)
A 		12
(-2.9)
A 		46
C 8.8
(-1.9)
A 		35.1
(2.9)
A 		9.2
(-1.9)
A 		35.5
(3)
A 		3.1
(-3)
A 		10.6
(-1.6)
A 		32
avr 29.1
(1.3) 		19.1
(-1.4) 		23.5
(-0.2) 		35.5
(3) 		13
(-3) 		20.8
(-0.9) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.6
(3)
A 		4.1
(-3)
A 		4.7
(-2.5)
A 		11.6
(3)
A 		8
B 6.4
(-0.2)
A 		4.1
(-3)
A 		9.1
(3)
A 		4.7
(-2.3)
A 		5
C 12.4
(2.2)
A 		8.7
(0.6)
A 		0.8
(-3)
A 		14.1
(3)
P 		13
avr 10.1
(3) 		5.6
(-2.2) 		4.9
(-3) 		10.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.8
(1.2)
A 		3.8
(-2.5)
A 		9.2
(2.5)
A 		3.3
(-3)
A 		5.8
(-0.7)
A 		9.7
(3)
P 		6
B 12.6
(1.5)
A 		3.9
(-3)
A 		4.6
(-2.6)
A 		15.4
(3)
A 		6.8
(-1.5)
A 		4.5
(-2.7)
A 		12
C 3.3
(-1.6)
A 		10.7
(3)
A 		2.3
(-2.2)
A 		7.1
(0.8)
A 		1
(-3)
A 		3.5
(-1.5)
A 		10
avr 7.9
(2) 		6.1
(-0.7) 		5.4
(-1.7) 		8.6
(3) 		4.5
(-3) 		5.9
(-1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180767_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9334
Sequence Type Exemplar sequence
Representative Public ID C06G3.4 NCBI
Target Description C06G3.4 /REP_DB=WormBase Gene ID /WP=CE07980 /TR=Q17748 /GB=AAB03134.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068687 NCBI Caenorhabditis elegans C06G3.4 (C06G3.4) mRNA, complete cds. 11/11 None
GENEFINDER00000008748 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7028775:7030951:1 9/11 None
C06G3.4 ENSEMBL cdna:known chromosome:CEL140:IV:7028442:7030951:1 gene:C06G3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008737 3/11 Cross Hyb Matching Probes None
SNAP00000008738 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7028447-7030957(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06G3.4
Entrez Gene 182342 Entrez gene
WormBase CE07980 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03134 Hypothetical protein C06G3.4 [Caenorhabditis elegans] ref|NP_501088.1| C06G3.4 [Caenorhabditis elegans] 0.0
blast CAA93497 Hypothetical protein F56D5.9 [Caenorhabditis elegans] ref|NP_501662.1| F56D5.9 [Caenorhabditis elegans] 0.0
blast CAA93497 Hypothetical protein F56D5.9 [Caenorhabditis elegans] ref|NP_501662.1| F56D5.9 [Caenorhabditis elegans] 1.0E-159
blast CAE74008 Hypothetical protein CBG21651 [Caenorhabditis briggsae] 1.0E-55
blast CAB02703 Hypothetical protein C01G10.1 [Caenorhabditis elegans] ref|NP_506722.1| C01G10.1 [Caenorhabditis elegans] 3.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501088.1 1 317-339
C06G3.4 1 317-339
GENEFINDER00000008748 1 132-154
Sequence
Target Sequence 
>C. ELEGANS:180767_AT
gatactcgattgactggtgatacttacaaatcattcattgactggtacaaaggaaatgta
actgatcaaatgtctggtgtaactcatttcattgtccaaactgattcaagtggtcgttta
aatccaacgatttcgcaagaatggatgagtgcttgtttgaccaagaaatcaaacttccga
aatgattataaatatcgtgtggaacaagtgaaatacaggggaaaagtgtatgaaacagtt
ttgaagtgggctgaatggattcacaagcagagaattccctacttatttggagtacatatc
tacgtggcaatcgagaagatgtctgcaaatgagaagattcaatggaagcaactagttgaa
atgcacggagccacgtggatggatcagatgccaaataaagcgaatttcaatgaaggatca
cacccattccatcatttccatctcagaccacttttcatctttcatgacacgaagaataac
atggattcaaataaaaacgacaagatgttcactctgatgacgtatcataaatttatcatt
ttcatgttaaagttggaatgctcctatgatccagagcgaaacgttcccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTCGATTGACTGGTGATACTT 702 423 1564 Antisense
GTAACTGATCAAATGTCTGGTGTAA 24 463 1621 Antisense
GTCCAAACTGATTCAAGTGGTCGTT 631 475 1657 Antisense
GAATGGATGAGTGCTTGTTTGACCA 625 329 1702 Antisense
AGCAGAGAATTCCCTACTTATTTGG 414 75 1829 Antisense
GGAGTACATATCTACGTGGCAATCG 342 517 1852 Antisense
AATGAAGGATCACACCCATTCCATC 183 165 1972 Antisense
TCAGACCACTTTTCATCTTTCATGA 632 623 2006 Antisense
AGATGTTCACTCTGATGACGTATCA 461 67 2066 Antisense
GTTGGAATGCTCCTATGATCCAGAG 135 437 2115 Antisense
TGATCCAGAGCGAAACGTTCCCATT 207 557 2130 Antisense
Sequence Source Affymetrix Proprietary Database