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[180766_at]

Description F13B6.3 /REP_DB=WormBase Gene ID /WP=CE16975 /TR=O44483 /GB=AAB92045.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 06      6grp_highest_nonorm > 20      6grp_total > 14      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2001
1 2 3 4 range
A 1741.8
(3)
P 		1176.4
(1)
P 		1017.8
(0.4)
P 		60.8
(-3)
A 		1681
B 2041.8
(3)
P 		1107.9
(0.2)
P 		988.5
(-0.2)
P 		40.6
(-3)
A 		2001
C 1829.9
(3)
P 		1005.5
(0.2)
P 		873.5
(-0.2)
P 		56.1
(-3)
A 		1774
avr 1871.2
(3) 		1096.6
(0.4) 		959.9
(-0) 		52.5
(-3) 		1819

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1555
1 2 3 4 5 6 range
A 1979.5
(3)
P 		1430.3
(0.8)
P 		839.8
(-1.5)
P 		940.4
(-1.1)
P 		611.6
(-2.4)
P 		452.9
(-3)
P 		1527
B 1693
(3)
P 		1265.7
(1)
P 		985.7
(-0.3)
P 		919
(-0.7)
P 		424.9
(-3)
P 		445.9
(-2.9)
P 		1268
C 1722.8
(3)
P 		1239.8
(0.7)
P 		1273.5
(0.9)
P 		882.6
(-1)
P 		549.7
(-2.6)
P 		464.4
(-3)
P 		1258
avr 1798.4
(3) 		1311.9
(0.8) 		1033
(-0.4) 		914
(-0.9) 		528.7
(-2.7) 		454.4
(-3) 		1344
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 643
1 2 3 4 range
A 634.2
(3)
P 		255.4
(-0.6)
P 		266.1
(-0.5)
P 		8.9
(-3)
A 		625
B 651.1
(3)
P 		273.6
(-0.5)
P 		229.1
(-0.9)
P 		8.6
(-3)
A 		643
C 605.7
(3)
P 		289.1
(-0.2)
P 		304.5
(-0)
P 		9.5
(-3)
A 		596
avr 630.3
(3) 		272.7
(-0.5) 		266.6
(-0.5) 		9
(-3) 		621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 528
1 2 3 4 5 6 range
A 364.9
(0.8)
P 		508.7
(3)
P 		182.9
(-1.9)
P 		238.5
(-1.1)
P 		184.6
(-1.9)
P 		110.3
(-3)
P 		398
B 589.1
(3)
P 		421.3
(0.6)
P 		239.3
(-2)
P 		243.4
(-1.9)
P 		172.6
(-2.9)
P 		166.3
(-3)
P 		423
C 638.6
(3)
P 		378.3
(-0.2)
P 		324.1
(-0.9)
P 		177.5
(-2.7)
P 		177.9
(-2.7)
P 		155.5
(-3)
P 		483
avr 530.9
(3) 		436.1
(1.5) 		248.8
(-1.4) 		219.8
(-1.8) 		178.4
(-2.5) 		144
(-3) 		387
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8756
Sequence Type Exemplar sequence
Representative Public ID F13B6.3 NCBI
Target Description F13B6.3 /REP_DB=WormBase Gene ID /WP=CE16975 /TR=O44483 /GB=AAB92045.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068792(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068792 NCBI Caenorhabditis elegans F13B6.3 (F13B6.3) mRNA, complete cds. 10/11 None
SNAP00000002765 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7461997:7462781:-1 10/11 None
F13B6.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:7461953:7465941:-1 gene:F13B6.3 10/11 None
F13B6.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:7461997:7465942:-1 gene:F13B6.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002764 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7461271-7464069(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13B6.3
Entrez Gene 177516 Entrez gene
SwissProt O44483 EMBL-EBI
WormBase CE31169 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92045 Hypothetical protein F13B6.3 [Caenorhabditis elegans] ref|NP_501193.2| F13B6.3 [Caenorhabditis elegans] 0.0
blast AAB92045 Hypothetical protein F13B6.3 [Caenorhabditis elegans] ref|NP_501193.2| F13B6.3 [Caenorhabditis elegans] 6.0E-62
Sequence
Target Sequence 
>C. ELEGANS:180766_AT
cgagcttaccggtgactgtgacataattcttcctgcaaattctaccagttttcaagttga
atcaacaaaatcggcctatgtaatcctgtttgatatcgaagaccttccagtaacaacatc
ttcacctgctactactccgaaacctacagcaaagcccacaacagcacccgaatgtacatg
cccaccaaccacgttcccaacaacaagagctccaaataccgcgtgccctcctgtatccac
ttgtcctccagttgtgacatgcccagcttcgtgcataaccacgaccactgaaattccaac
taccactgacggagcggccactgaaatggtggctgattctccattccgaacttcaattgt
ggaatattcgaagagcggaatgacttttccggagatcagagcttcggactttgatggaaa
aaacacgacttggtcatccggtgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGCTTACCGGTGACTGTGACATA 417 251 498 Antisense
GACTGTGACATAATTCTTCCTGCAA 64 377 511 Antisense
AAATCGGCCTATGTAATCCTGTTTG 699 117 565 Antisense
GACCTTCCAGTAACAACATCTTCAC 312 381 598 Antisense
CTGCTACTACTCCGAAACCTACAGC 527 229 623 Antisense
AACAGCACCCGAATGTACATGCCCA 334 137 657 Antisense
AACAAGAGCTCCAAATACCGCGTGC 9 135 699 Antisense
TCCACTTGTCCTCCAGTTGTGACAT 354 589 733 Antisense
AACCACGACCACTGAAATTCCAACT 242 145 774 Antisense
TTCCAACTACCACTGACGGAGCGGC 630 699 791 Antisense
AACACGACTTGGTCATCCGGTGTCT 532 133 919 Antisense
Sequence Source Affymetrix Proprietary Database