[Home] | [Total List]

[180765_at]

Description W02D7.2 /REP_DB=WormBase Gene ID /WP=CE14438 /TR=O17530 /GB=AAB63940.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 63      6grp_total > 63      4grp_total > 53      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 174.9
(3)
P 		107.7
(-1.3)
M 		100.5
(-1.7)
P 		80.3
(-3)
M 		95
B 217.2
(3)
P 		155
(1.2)
P 		151.5
(1.1)
P 		7.3
(-3)
A 		210
C 179.6
(2.7)
P 		186.8
(3)
P 		151.2
(1.5)
P 		46.3
(-3)
A 		141
avr 190.6
(3) 		149.8
(1.3) 		134.4
(0.7) 		44.6
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 80.7
(-3)
A 		144.5
(-0.9)
P 		265
(3)
P 		230.9
(1.9)
P 		231.5
(1.9)
P 		150.9
(-0.7)
P 		184
B 98.1
(-3)
P 		106.5
(-2.6)
P 		211.5
(3)
P 		187.5
(1.7)
P 		149.6
(-0.3)
P 		153.6
(-0.1)
P 		113
C 142.5
(-2.5)
P 		128
(-3)
M 		297.6
(3)
P 		192
(-0.7)
P 		130.3
(-2.9)
P 		155.5
(-2)
P 		170
avr 107.1
(-3) 		126.3
(-2.2) 		258
(3) 		203.5
(0.8) 		170.5
(-0.5) 		153.3
(-1.2) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 63.7
(3)
P 		23.4
(-1.7)
M 		26.3
(-1.3)
P 		11.8
(-3)
M 		52
B 69.3
(3)
P 		38.3
(0.3)
P 		35.1
(-0)
P 		1.6
(-3)
A 		68
C 59.4
(3)
P 		53.7
(2.3)
P 		52.7
(2.2)
P 		7.8
(-3)
A 		52
avr 64.1
(3) 		38.5
(0.3) 		38
(0.3) 		7.1
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 14.9
(-3)
A 		51.4
(1)
P 		57.7
(1.7)
P 		58.6
(1.8)
P 		69.8
(3)
P 		36.7
(-0.6)
P 		55
B 34.1
(-3)
P 		35.5
(-2.7)
P 		51.4
(0.9)
P 		49.7
(0.5)
P 		60.8
(3)
P 		57.3
(2.2)
P 		27
C 52.8
(-0.7)
P 		39.1
(-2.9)
M 		75.7
(3)
P 		38.6
(-3)
P 		42.2
(-2.4)
P 		52.1
(-0.8)
P 		37
avr 33.9
(-3) 		42
(-1.2) 		61.6
(3) 		49
(0.3) 		57.6
(2.1) 		48.7
(0.2) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180765_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11839
Sequence Type Exemplar sequence
Representative Public ID W02D7.2 NCBI
Target Description W02D7.2 /REP_DB=WormBase Gene ID /WP=CE14438 /TR=O17530 /GB=AAB63940.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029010
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W02D7.2 ENSEMBL cdna:known chromosome:CEL140:V:8310568:8314609:1 gene:W02D7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029010 6/11 Cross Hyb Matching Probes None
NM_072746 4/11 Cross Hyb Matching Probes None
SNAP00000029337 4/11 Cross Hyb Matching Probes None
SNAP00000029338 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029341 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029350 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8310568-8314610(+) 100.0 100.0
Public Domain and Genome References
Ensembl W02D7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T29846 hypothetical protein W02D7.2 - Caenorhabditis elegans 0.0
blast NP_505147 W02D7.2 [Caenorhabditis elegans] gb|AAY43994.1| Hypothetical protein W02D7.2 [Caenorhabditis elegans] 0.0
blast CAE58211 Hypothetical protein CBG01306 [Caenorhabditis briggsae] 6.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.7E-14
Sequence
Target Sequence 
>C. ELEGANS:180765_AT
gaagctctttcttctcaaccaaagccattcaaataccatataggattacactatgtaaat
ggtggatacttctgggaacaagccattggtattccattaattcccgtttcaactccactt
tacccactcgataatgtaccttctacaactcaacagtgtgttagaaacataggaacactt
gactctgaagatctcaaatgggacaatgaaaactgctttaatgatgttagtcctttgatg
tgtgaggttcctgcattctgcggatgtgagacagctccaccactcttcactggcaatttt
ttcaacactgttatcaaaccagaaaacactgcagaggaccgaaaaatggtaactgcaact
acaccagaagtcaagggatgtcaagtttccgttgaatgcaaattttcggaagttcctgat
ttggaagaatatcgcatgatttacgttatcgaaggtcaagaaactccatacagttccaat
cttaatgacgtgacctgtgttggatcaaaatggatggttgagaacaacgaagttacttct
gtcggctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCTTTCTTCTCAACCAAAGC 266 341 802 Antisense
TATTCCATTAATTCCCGTTTCAACT 552 661 891 Antisense
ACCCACTCGATAATGTACCTTCTAC 544 89 923 Antisense
GGAACACTTGACTCTGAAGATCTCA 316 529 973 Antisense
GATGTGTGAGGTTCCTGCATTCTGC 260 409 1038 Antisense
TGCGGATGTGAGACAGCTCCACCAC 594 583 1060 Antisense
ACCACTCTTCACTGGCAATTTTTTC 540 85 1080 Antisense
GGGATGTCAAGTTTCCGTTGAATGC 28 497 1176 Antisense
GAAACTCCATACAGTTCCAATCTTA 612 357 1261 Antisense
AATGACGTGACCTGTGTTGGATCAA 94 165 1285 Antisense
AACGAAGTTACTTCTGTCGGCTGCT 531 143 1327 Antisense
Sequence Source Affymetrix Proprietary Database