[Home] | [Total List]

[180764_at]

Description K04F1.8 /REP_DB=WormBase Gene ID /WP=CE19959 /TR=Q9TXL2 /GB=AAC78167.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 27.4
(0.4)
A 		11
(-2)
A 		4.6
(-3)
A 		44.7
(3)
A 		40
B 4.9
(-2)
A 		2.4
(-3)
A 		10.6
(0.3)
A 		17.2
(3)
A 		15
C 6.1
(-2.6)
A 		32.2
(0.1)
A 		2.7
(-3)
A 		60.1
(3)
P 		57
avr 12.8
(-1.8) 		15.2
(-1.4) 		6
(-3) 		40.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 6.8
(-1.2)
A 		12
(1.1)
A 		2.5
(-3)
A 		16.5
(3)
A 		12.9
(1.5)
A 		6.1
(-1.5)
A 		14
B 15.1
(3)
A 		7.7
(-0.4)
A 		3
(-2.5)
A 		2.9
(-2.5)
A 		12.2
(1.7)
A 		1.9
(-3)
A 		13
C 5.6
(-2.3)
A 		3.3
(-2.9)
A 		7
(-2)
A 		27.8
(3)
A 		2.7
(-3)
A 		2.9
(-3)
A 		25
avr 9.2
(-0.2) 		7.7
(-1) 		4.2
(-2.7) 		15.7
(3) 		9.3
(-0.2) 		3.6
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10
(3)
A 		2.4
(-2.2)
A 		1.2
(-3)
A 		6.5
(0.6)
A 		9
B 1.6
(-1.1)
A 		0.6
(-3)
A 		2.5
(0.7)
A 		3.7
(3)
A 		3
C 2
(-2.3)
A 		9.3
(2.5)
A 		1
(-3)
A 		10.1
(3)
P 		9
avr 4.5
(0.3) 		4.1
(-0.1) 		1.6
(-3) 		6.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.3
(-1.9)
A 		4.3
(3)
A 		0.6
(-3)
A 		4.2
(2.8)
A 		3.9
(2.4)
A 		1.5
(-1.5)
A 		4
B 5.2
(3)
A 		2.6
(-0.5)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		5
(2.7)
A 		0.7
(-3)
A 		5
C 2.1
(-1.5)
A 		1
(-2.9)
A 		1.8
(-1.9)
A 		5.6
(3)
A 		0.9
(-3)
A 		1
(-2.9)
A 		5
avr 2.9
(1.6) 		2.6
(0.8) 		1
(-3) 		3.5
(3) 		3.3
(2.5) 		1.1
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180764_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15079
Sequence Type Exemplar sequence
Representative Public ID K04F1.8 NCBI
Target Description K04F1.8 /REP_DB=WormBase Gene ID /WP=CE19959 /TR=Q9TXL2 /GB=AAC78167.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071074 NCBI Caenorhabditis elegans K04F1.8 (K04F1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000011974 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1667033:1667642:1 11/11 None
K04F1.8 ENSEMBL cdna:known chromosome:CEL140:V:1667033:1667642:1 gene:K04F1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011964 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1667032-1667642(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04F1.8
Entrez Gene 186994 Entrez gene
SwissProt Q9TXL2 EMBL-EBI
WormBase CE19959 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78167 Hypothetical protein K04F1.8 [Caenorhabditis elegans] ref|NP_503475.1| K04F1.8 [Caenorhabditis elegans] 4.0E-78
blast AAC78168 Hypothetical protein K04F1.9 [Caenorhabditis elegans] ref|NP_503474.1| K04F1.9 [Caenorhabditis elegans] 2.0E-19
blast NP_490777 Y18H1A.8 [Caenorhabditis elegans] gb|AAK21511.2| Hypothetical protein Y18H1A.8 [Caenorhabditis elegans] 6.0E-14
Sequence
Target Sequence 
>C. ELEGANS:180764_AT
agactttcctgatattgctttgctgttttttgagcgtacaaactcttttgacaaagttcc
tttttagaggaagactgctttgcaacaagtctagcctcaggtatcaaatgaagattaagg
aattggacacctttgtcgacgacacaatttcccgaattccaccaattgagtcaatttctc
ctcactactatgaagcatatgccgaagaagatggagacggattcctggatatgtattacg
aacttttcattacaatcctgcacaattgttcggacgatggcaagaatagatttttaaaag
ttgatattggatcaattccaattagacatgggtggattcatagaacattggatattgaat
taaccaacgtgggaatcgtaactacagatctgatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACTTTCCTGATATTGCTTTGCTG 577 71 26 Antisense
TGCTTTGCTGTTTTTTGAGCGTACA 595 579 41 Antisense
TGCAACAAGTCTAGCCTCAGGTATC 430 577 106 Antisense
GGAATTGGACACCTTTGTCGACGAC 335 533 144 Antisense
TGTCGACGACACAATTTCCCGAATT 503 557 159 Antisense
TTCCCGAATTCCACCAATTGAGTCA 246 697 174 Antisense
ATTGAGTCAATTTCTCCTCACTACT 146 5 190 Antisense
ATTTCTCCTCACTACTATGAAGCAT 115 17 199 Antisense
GATGGAGACGGATTCCTGGATATGT 438 407 235 Antisense
AATCCTGCACAATTGTTCGGACGAT 21 169 279 Antisense
GGAATCGTAACTACAGATCTGATCC 264 533 397 Antisense
Sequence Source Affymetrix Proprietary Database