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[180763_at]

Description ZC266.1 /REP_DB=WormBase Gene ID /WP=CE07590 /TR=Q23254 /GB=AAA96102.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 11      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 3.1
(-3)
A 		23.1
(-1.1)
A 		5.1
(-2.8)
A 		65.4
(3)
A 		62
B 12.1
(-1.2)
A 		9.3
(-1.9)
A 		4.6
(-3)
A 		30.3
(3)
A 		26
C 27.4
(-1.3)
A 		16.6
(-2.1)
A 		4.5
(-3)
A 		86
(3)
P 		82
avr 14.2
(-2) 		16.3
(-1.8) 		4.7
(-3) 		60.6
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 5.9
(-2.2)
A 		4.9
(-2.5)
A 		25.5
(3)
A 		3.8
(-2.8)
A 		5.3
(-2.4)
A 		2.9
(-3)
A 		23
B 16.1
(3)
A 		2.8
(-2.9)
A 		6.2
(-1.4)
A 		11.1
(0.8)
A 		7.7
(-0.7)
A 		2.5
(-3)
A 		14
C 25.7
(3)
A 		19.9
(1.6)
A 		4.5
(-2.3)
A 		2.6
(-2.8)
A 		1.7
(-3)
A 		3.6
(-2.5)
A 		24
avr 15.9
(3) 		9.2
(-0.1) 		12.1
(1.2) 		5.8
(-1.7) 		4.9
(-2.1) 		3
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.1
(-3)
A 		5
(-0.2)
A 		1.3
(-2.9)
A 		9.6
(3)
A 		9
B 3.8
(0.1)
A 		2.3
(-1.6)
A 		1.1
(-3)
A 		6.4
(3)
A 		5
C 9.1
(0.5)
A 		4.8
(-1.5)
A 		1.6
(-3)
A 		14.5
(3)
P 		13
avr 4.7
(-0.7) 		4
(-1.2) 		1.3
(-3) 		10.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.1
(-2.5)
A 		1.8
(-1.6)
A 		5.5
(3)
A 		1
(-2.6)
A 		1.6
(-1.9)
A 		0.7
(-3)
A 		5
B 5.6
(3)
A 		0.9
(-3)
A 		1.5
(-2.2)
A 		2.9
(-0.4)
A 		3.1
(-0.2)
A 		0.9
(-3)
A 		5
C 9.5
(3)
A 		6.1
(0.7)
A 		1.1
(-2.6)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		1.2
(-2.5)
A 		9
avr 5.4
(3) 		2.9
(-0.3) 		2.7
(-0.6) 		1.5
(-2.2) 		1.8
(-1.8) 		0.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15143
Sequence Type Exemplar sequence
Representative Public ID ZC266.1 NCBI
Target Description ZC266.1 /REP_DB=WormBase Gene ID /WP=CE07590 /TR=Q23254 /GB=AAA96102.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071865 NCBI Caenorhabditis elegans ZC266.1 (ZC266.1) mRNA, complete cds. 11/11 None
ZC266.1 ENSEMBL cdna:known chromosome:CEL140:V:4699782:4700293:-1 gene:ZC266.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006417 4/11 Cross Hyb Matching Probes None
GENEFINDER00000006419 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4699781-4700293(-) 94.57 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC266.1
Entrez Gene 191134 Entrez gene
SwissProt Q23254 EMBL-EBI
WormBase CE07590 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96102 Hypothetical protein ZC266.1 [Caenorhabditis elegans] ref|NP_504266.1| ZC266.1 [Caenorhabditis elegans] 4.0E-71
blast CAE64176 Hypothetical protein CBG08799 [Caenorhabditis briggsae] 3.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504266.1 2 20-42,78-100
ZC266.1 2 20-42,78-100
Sequence
Target Sequence 
>C. ELEGANS:180763_AT
ctcccgtcaatttgtgcttttgtttctgtctcctcttctcacaatactattcatgtcatt
ttgaccacaccccccgcaggctccatattttttctgtcggcttgttttcctacgacctct
aacattgcaaaatttcagatgtcatttgacacaaattccaccacaatgttggaacagtta
gaggcggatggggaatatggagggcctgcaaaaccaaagaaaatcataaaattctggatg
atccttgcggcaatttcagtgctcggaattatatttaatttaggactattgctcaggaga
aagtttacatcgcttgggcaatttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCGTCAATTTGTGCTTTTGTTT 325 233 22 Antisense
TCCTCTTCTCACAATACTATTCATG 619 591 52 Antisense
ATTCATGTCATTTTGACCACACCCC 31 13 70 Antisense
CTCCATATTTTTTCTGTCGGCTTGT 327 235 102 Antisense
TCTGTCGGCTTGTTTTCCTACGACC 454 607 114 Antisense
TTTCCTACGACCTCTAACATTGCAA 98 667 127 Antisense
GGAACAGTTAGAGGCGGATGGGGAA 470 527 192 Antisense
GGATGGGGAATATGGAGGGCCTGCA 442 513 207 Antisense
AATTCTGGATGATCCTTGCGGCAAT 249 177 251 Antisense
CCTTGCGGCAATTTCAGTGCTCGGA 295 269 264 Antisense
GTTTACATCGCTTGGGCAATTTCTA 550 449 324 Antisense
Sequence Source Affymetrix Proprietary Database