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[180762_at]

Description C10G8.2 /REP_DB=WormBase Gene ID /WP=CE08073 /TR=Q94164 /GB=AAB09170.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 75.6
(-3)
A 		118.6
(-0.2)
A 		114
(-0.5)
A 		167.8
(3)
P 		92
B 55
(-3)
A 		129.6
(3)
A 		73.6
(-1.5)
A 		66
(-2.1)
A 		75
C 51.7
(-3)
A 		133.5
(3)
A 		86.6
(-0.4)
A 		121.9
(2.1)
P 		82
avr 60.8
(-3) 		127.2
(3) 		91.4
(-0.2) 		118.6
(2.2) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 85.6
(2.5)
A 		25.1
(-3)
A 		55
(-0.3)
A 		90.6
(3)
A 		77.6
(1.8)
A 		82.5
(2.3)
A 		66
B 80.7
(0.9)
A 		62.8
(-1.9)
A 		77.8
(0.4)
A 		55.8
(-3)
A 		94.3
(3)
A 		71.7
(-0.5)
A 		39
C 100.4
(3)
A 		90.2
(2.2)
A 		92.3
(2.3)
A 		27
(-3)
A 		60.5
(-0.3)
A 		64.4
(0.1)
P 		73
avr 88.9
(3) 		59.4
(-2.7) 		75
(0.3) 		57.8
(-3) 		77.5
(0.8) 		72.9
(-0.1) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 27.5
(0.3)
A 		25.7
(-1.7)
A 		29.8
(3)
A 		24.6
(-3)
P 		5
B 17.5
(-1.9)
A 		32
(3)
A 		17.1
(-2)
A 		14.1
(-3)
A 		18
C 17.1
(-3)
A 		38.4
(3)
A 		30.2
(0.7)
A 		20.6
(-2)
P 		21
avr 20.7
(-2.6) 		32
(3) 		25.7
(-0.1) 		19.8
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 15.8
(-0.1)
A 		8.9
(-3)
A 		12
(-1.7)
A 		23
(2.8)
A 		23.4
(3)
A 		20.1
(1.6)
A 		15
B 28.1
(0.4)
A 		20.9
(-1.4)
A 		18.9
(-2)
A 		14.8
(-3)
A 		38.3
(3)
A 		26.7
(0)
A 		24
C 37.2
(3)
A 		27.5
(1.2)
A 		23.5
(0.4)
A 		5.4
(-3)
A 		19.6
(-0.3)
A 		21.6
(0.1)
P 		32
avr 27
(3) 		19.1
(-0.8) 		18.1
(-1.3) 		14.4
(-3) 		27.1
(3) 		22.8
(1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180762_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11326
Sequence Type Exemplar sequence
Representative Public ID C10G8.2 NCBI
Target Description C10G8.2 /REP_DB=WormBase Gene ID /WP=CE08073 /TR=Q94164 /GB=AAB09170.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072017 NCBI Caenorhabditis elegans C10G8.2 (C10G8.2) mRNA, complete cds. 11/11 None
C10G8.2 ENSEMBL cdna:known chromosome:CEL140:V:5314216:5315401:1 gene:C10G8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5314215-5315401(+) 90.75 100.0
Public Domain and Genome References
Gene Title
Ensembl C10G8.2
Entrez Gene 182501 Entrez gene
SwissProt Q94164 EMBL-EBI
WormBase CE08073 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09170 Hypothetical protein C10G8.2 [Caenorhabditis elegans] ref|NP_504418.1| C10G8.2 [Caenorhabditis elegans] 1.0E-116
blast CAE64053 Hypothetical protein CBG08652 [Caenorhabditis briggsae] 3.0E-16
blast CAE62636 Hypothetical protein CBG06766 [Caenorhabditis briggsae] 6.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 6.6E-16
Sequence
Target Sequence 
>C. ELEGANS:180762_AT
tctccctggttttctaattcatggcgcgttatcgccacgatgctcgaagtcgatttttga
ttcaaatttaacagcaaaatgtgagaagtcgtctacaattaaatttcattttgatcagtc
aactggattatgcatgaatttccgatgggacgggtgtaaagatcaggaaaataaatttga
tagtcttcaagaatgtgcatcaacttgtctgaaaagcaactataaaggatgcccatttca
tcgaaatccggctataccccagcaatgcgcaagtcataaagattgtaattggaaaacaag
caaaatcaattctcattattgtactagaaaaggaatatgctgtcaatcaaaagatttaga
agagctgagatcggagttcaatgtaacatgcccagacggtcgtcggaaagttgaatatac
ttataaaagcacaacgagactgttaattgggaagacgtgttcttcaaacatttgcccact
caacgccatgtgccatcaaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCCTGGTTTTCTAATTCATGGC 347 611 39 Antisense
ATTCATGGCGCGTTATCGCCACGAT 477 11 55 Antisense
TCGCCACGATGCTCGAAGTCGATTT 343 597 70 Antisense
GAATGTGCATCAACTTGTCTGAAAA 131 333 229 Antisense
GGATGCCCATTTCATCGAAATCCGG 247 513 265 Antisense
TTCATCGAAATCCGGCTATACCCCA 99 689 275 Antisense
GCTATACCCCAGCAATGCGCAAGTC 604 301 289 Antisense
GATCGGAGTTCAATGTAACATGCCC 122 419 407 Antisense
TAACATGCCCAGACGGTCGTCGGAA 464 639 422 Antisense
GTGTTCTTCAAACATTTGCCCACTC 438 481 495 Antisense
CTCAACGCCATGTGCCATCAAAAAA 475 227 517 Antisense
Sequence Source Affymetrix Proprietary Database