[Home] | [Total List]

[180759_at]

Description F36H9.2 /REP_DB=WormBase Gene ID /WP=CE09968 /TR=O16622 /GB=AAB66090.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 20      6grp_total > 33      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 23
(-1.2)
A 		39.9
(2.1)
A 		44.4
(3)
A 		13.5
(-3)
A 		31
B 37.4
(3)
A 		20.2
(-2.6)
A 		19.1
(-3)
A 		23.5
(-1.6)
A 		18
C 58.2
(1.2)
A 		31.5
(-2.7)
A 		29.4
(-3)
A 		70.1
(3)
A 		41
avr 39.5
(3) 		30.5
(-3) 		31
(-2.7) 		35.7
(0.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 126.7
(3)
A 		50.2
(-2.6)
A 		87.5
(0.1)
P 		86.4
(0.1)
P 		88.5
(0.2)
A 		44.5
(-3)
A 		82
B 77.4
(1)
A 		106.4
(3)
P 		103.2
(2.8)
P 		18.8
(-3)
A 		54.1
(-0.6)
A 		30.7
(-2.2)
A 		88
C 88.6
(3)
P 		62.9
(-0.2)
P 		60.3
(-0.5)
A 		39.9
(-3)
A 		43.2
(-2.6)
P 		43.5
(-2.6)
P 		49
avr 97.6
(3) 		73.2
(0.5) 		83.7
(1.6) 		48.4
(-2.1) 		61.9
(-0.7) 		39.6
(-3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.4
(1)
A 		8.7
(1.2)
A 		11.6
(3)
A 		2
(-3)
A 		10
B 11.9
(3)
A 		5
(-2.5)
A 		4.4
(-3)
A 		5
(-2.5)
A 		8
C 19.3
(3)
A 		9.1
(-3)
A 		10.2
(-2.4)
A 		11.8
(-1.4)
A 		10
avr 13.2
(3) 		7.6
(-1.9) 		8.7
(-0.9) 		6.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 23.4
(1.8)
A 		17.9
(-0.3)
A 		19.1
(0.1)
P 		21.9
(1.2)
P 		26.7
(3)
A 		10.8
(-3)
A 		16
B 26.9
(1.3)
A 		35.4
(3)
P 		25.1
(1)
P 		5
(-3)
A 		22
(0.4)
A 		11.5
(-1.7)
A 		30
C 32.8
(3)
P 		19.2
(-0.3)
P 		15.4
(-1.2)
A 		8
(-3)
A 		14
(-1.5)
P 		14.6
(-1.4)
P 		25
avr 27.7
(3) 		24.2
(1.7) 		19.9
(0.1) 		11.6
(-3) 		20.9
(0.5) 		12.3
(-2.7) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15526
Sequence Type Exemplar sequence
Representative Public ID F36H9.2 NCBI
Target Description F36H9.2 /REP_DB=WormBase Gene ID /WP=CE09968 /TR=O16622 /GB=AAB66090.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071103(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071103 NCBI Caenorhabditis elegans F36H9.2 (F36H9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000002201 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1788363:1793070:1 11/11 None
F36H9.2 ENSEMBL cdna:known chromosome:CEL140:V:1788339:1793070:1 gene:F36H9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002196 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1788338-1793070(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H9.2
Entrez Gene 185389 Entrez gene
SwissProt O16622 EMBL-EBI
WormBase CE09968 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4675 transmembrane receptor protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5024 transforming growth factor beta receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66090 Hypothetical protein F36H9.2 [Caenorhabditis elegans] ref|NP_503504.1| F36H9.2 [Caenorhabditis elegans] 1.0E-169
blast AAB66090 Hypothetical protein F36H9.2 [Caenorhabditis elegans] ref|NP_503504.1| F36H9.2 [Caenorhabditis elegans] 1.0E-165
blast CAE66778 Hypothetical protein CBG12135 [Caenorhabditis briggsae] 3.0E-76
blast AAB66091 Hypothetical protein F36H9.1 [Caenorhabditis elegans] ref|NP_503505.2| F36H9.1 [Caenorhabditis elegans] 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 7.8E-22
Pfam IPR000472 EMBL-EBI TGF-beta receptor/activin receptor, type I/II 7.8E-22
Sequence
Target Sequence 
>C. ELEGANS:180759_AT
gaatcggaagggactcgtttcgtgcgtctgtagcactgatatgtgtaacgtcgacacgtt
ttctattccgacggatattgttctcactgccccaccaacaatcaaatgctataataagtt
tgtggatgatgataatttctgttttgggcaattttgcaggtactcaagacagttggtacc
aaatgactttggcgatgtgcaaatttcctcattttttcctgaacggggatgtagtgattt
ggaatataatcatgacctcgcctcaatgaatgtttgctacacgaacgatgaaatgatcgt
atgtcaatgtaacacagaattttgcaataaagatcagccattcgatgtgccgatgggaaa
tttactgtgttattacaactctaacggcaagccaggaaacattcctggaatgaagtactg
tcgaggtcacctatgttacgtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGGAAGGGACTCGTTTCGTGC 528 305 222 Antisense
GTTTCGTGCGTCTGTAGCACTGATA 161 451 238 Antisense
TCGACACGTTTTCTATTCCGACGGA 701 599 272 Antisense
TTCCGACGGATATTGTTCTCACTGC 482 699 287 Antisense
TGCCCCACCAACAATCAAATGCTAT 628 583 309 Antisense
TTGGCGATGTGCAAATTTCCTCATT 589 707 410 Antisense
TGGAATATAATCATGACCTCGCCTC 309 547 461 Antisense
GACCTCGCCTCAATGAATGTTTGCT 387 383 475 Antisense
AGATCAGCCATTCGATGTGCCGATG 484 65 552 Antisense
ATTACAACTCTAACGGCAAGCCAGG 289 11 593 Antisense
GTCGAGGTCACCTATGTTACGTGCA 344 473 641 Antisense
Sequence Source Affymetrix Proprietary Database