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[180758_at]

Description T23E7.4 /REP_DB=WormBase Gene ID /WP=CE14070 /TR=O17341 /GB=AAB71255.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 75      6grp_total > 28      4grp_total > 05      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1865
1 2 3 4 range
A 973.5
(-1)
P 		389.4
(-3)
P 		426.4
(-2.9)
P 		2146
(3)
P 		1757
B 1080.4
(-0.9)
P 		520.2
(-2.8)
P 		463.9
(-3)
P 		2254.6
(3)
P 		1791
C 1135.1
(-0.9)
P 		656.1
(-2.6)
P 		532.1
(-3)
P 		2247.4
(3)
P 		1715
avr 1063
(-1) 		521.9
(-2.8) 		474.1
(-3) 		2216
(3) 		1742

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 651
1 2 3 4 5 6 range
A 881
(2.7)
P 		890.1
(3)
P 		834
(1.3)
P 		687.7
(-3)
P 		700.9
(-2.6)
P 		767.9
(-0.6)
P 		202
B 893
(3)
P 		889.9
(2.9)
P 		722.7
(-3)
P 		745.7
(-2.2)
P 		839.1
(1.1)
P 		849.6
(1.5)
P 		170
C 1210
(3)
P 		809.9
(-0.7)
P 		657.6
(-2.1)
P 		558.6
(-3)
P 		878
(-0.1)
P 		866.9
(-0.2)
P 		651
avr 994.7
(3) 		863.3
(0.6) 		738.1
(-1.7) 		664
(-3) 		806
(-0.4) 		828.1
(-0) 		331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 396
1 2 3 4 range
A 354.5
(3)
P 		84.5
(-3)
P 		111.5
(-2.4)
P 		314.1
(2.1)
P 		270
B 344.5
(0.8)
P 		128.5
(-2.7)
P 		107.5
(-3)
P 		480.4
(3)
P 		373
C 375.8
(2.9)
P 		188.6
(-2.9)
P 		185.4
(-3)
P 		378.9
(3)
P 		194
avr 358.3
(2.2) 		133.9
(-3) 		134.8
(-3) 		391.1
(3) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 162.4
(-3)
P 		316.6
(3)
P 		181.6
(-2.3)
P 		174.4
(-2.5)
P 		211.5
(-1.1)
P 		186.9
(-2)
P 		154
B 310.7
(1.9)
P 		296.2
(1.4)
P 		175.5
(-3)
P 		197.5
(-2.2)
P 		340.9
(3)
P 		316.8
(2.1)
P 		165
C 448.5
(3)
P 		247.1
(-0.6)
P 		167.4
(-2)
P 		112.3
(-3)
P 		284.1
(0.1)
P 		290.2
(0.2)
P 		336
avr 307.2
(3) 		286.6
(2.2) 		174.8
(-2.4) 		161.4
(-3) 		278.8
(1.8) 		264.6
(1.2) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17421
Sequence Type Exemplar sequence
Representative Public ID T23E7.4 NCBI
Target Description T23E7.4 /REP_DB=WormBase Gene ID /WP=CE14070 /TR=O17341 /GB=AAB71255.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078449(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078449 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-6) (nlp-6) mRNA, complete cds. 9/11 None
GENEFINDER00000038223 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17662348:17664068:1 11/11 None
T23E7.4 ENSEMBL cdna:known chromosome:CEL140:X:17662348:17663812:1 gene:T23E7.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038216 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17662346-17664067(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nlp-6
Ensembl T23E7.4
Entrez Gene 188798 Entrez gene
SwissProt O17341 EMBL-EBI
WormBase CE38554 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast F89756 protein T23E7.4 [imported] - Caenorhabditis elegans 3.0E-61
blast F89756 protein T23E7.4 [imported] - Caenorhabditis elegans 1.0E-45
blast CAE58702 Hypothetical protein CBG01885 [Caenorhabditis briggsae] 1.0E-43
blast AAB71255 Neuropeptide-like protein protein 6 [Caenorhabditis elegans] ref|NP_510850.2| Neuropeptide-Like Protein family member (nlp-6) [Caenorhabditis elegans] 2.0E-42
blast AAB71255 Neuropeptide-like protein protein 6 [Caenorhabditis elegans] ref|NP_510850.2| Neuropeptide-Like Protein family member (nlp-6) [Caenorhabditis elegans] 3.0E-40
blast F89756 protein T23E7.4 [imported] - Caenorhabditis elegans 4.0E-40
blast CAE58702 Hypothetical protein CBG01885 [Caenorhabditis briggsae] 9.0E-36
blast CAE58702 Hypothetical protein CBG01885 [Caenorhabditis briggsae] 5.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510850.2 1 7-29
T23E7.4 1 15-37
GENEFINDER00000038223 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:180758_AT
taggtacaatgctcagcttttcgcgactcgccttcgttcttctcgtctcggcgtgcgtca
tggcaatggctgctccaaaacaaatggtgttcggatttggcaagcgatcaatggctgata
ttagtgatatgcctgaagacgtgccaatgaaacgctacaagccaagaagtttcgcaatgg
gattcggaaagcgagctgcaatgagaagcttcaacatgggatttggcaagcgatccgcag
agccacagattgattatgaagacatgtctgctgatctcgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGGTACAATGCTCAGCTTTTCGCG 414 653 29 Antisense
CGTCATGGCAATGGCTGCTCCAAAA 586 245 84 Antisense
AAATGGTGTTCGGATTTGGCAAGCG 314 115 110 Antisense
GATATGCCTGAAGACGTGCCAATGA 161 425 154 Antisense
GTGCCAATGAAACGCTACAAGCCAA 703 477 169 Antisense
AAGAAGTTTCGCAATGGGATTCGGA 515 151 192 Antisense
GGGATTCGGAAAGCGAGCTGCAATG 29 495 207 Antisense
GAGAAGCTTCAACATGGGATTTGGC 456 389 231 Antisense
GGGATTTGGCAAGCGATCCGCAGAG 644 495 246 Antisense
CGATCCGCAGAGCCACAGATTGATT 469 249 259 Antisense
GAAGACATGTCTGCTGATCTCGAGG 74 341 286 Antisense
Sequence Source Affymetrix Proprietary Database