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[180757_at]

Description C09H10.8 /REP_DB=WormBase Gene ID /WP=CE02137 /TR=Q17884 /GB=CAA90439.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 22      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 66
(1)
P 		9.5
(-3)
A 		24.5
(-1.9)
A 		95.2
(3)
P 		86
B 98.6
(3)
P 		50.8
(-0.8)
A 		22.3
(-3)
A 		74.9
(1.1)
M 		76
C 80
(1.1)
P 		81.6
(1.3)
P 		41.7
(-3)
A 		97.7
(3)
P 		56
avr 81.5
(2.2) 		47.3
(-1.2) 		29.5
(-3) 		89.3
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 60.7
(2.7)
A 		63.8
(3)
A 		21.5
(-1.6)
A 		8.4
(-3)
A 		18.8
(-1.9)
A 		53.7
(1.9)
A 		55
B 77
(1.6)
P 		95.9
(3)
P 		12.9
(-3)
A 		42.2
(-0.9)
A 		66.2
(0.9)
A 		66.1
(0.8)
A 		83
C 89.6
(3)
P 		81.1
(2.4)
A 		62.8
(1)
A 		10.6
(-3)
A 		60.4
(0.8)
A 		76.2
(2)
P 		79
avr 75.8
(2.5) 		80.3
(3) 		32.4
(-1.8) 		20.4
(-3) 		48.5
(-0.2) 		65.3
(1.5) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 24
(3)
P 		2.1
(-3)
A 		6.4
(-1.8)
A 		13.9
(0.2)
P 		22
B 31.4
(3)
P 		12.5
(-1.3)
A 		5.2
(-3)
A 		16
(-0.5)
M 		26
C 26.5
(3)
P 		23.4
(1.5)
P 		14.5
(-3)
A 		16.5
(-2)
P 		12
avr 27.3
(3) 		12.7
(-1.7) 		8.7
(-3) 		15.5
(-0.8) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 11.2
(-0.3)
A 		22.7
(3)
A 		4.7
(-2.2)
A 		2.1
(-3)
A 		5.7
(-2)
A 		13.1
(0.2)
A 		21
B 26.8
(1.9)
P 		31.9
(3)
P 		3.1
(-3)
A 		11.2
(-1.3)
A 		26.9
(2)
A 		24.6
(1.5)
A 		29
C 33.2
(3)
P 		24.8
(1.4)
A 		16
(-0.3)
A 		2.1
(-3)
A 		19.6
(0.4)
A 		25.5
(1.5)
P 		31
avr 23.7
(2.2) 		26.5
(3) 		7.9
(-2.2) 		5.1
(-3) 		17.4
(0.4) 		21.1
(1.5) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180757_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2651
Sequence Type Exemplar sequence
Representative Public ID C09H10.8 NCBI
Target Description C09H10.8 /REP_DB=WormBase Gene ID /WP=CE02137 /TR=Q17884 /GB=CAA90439.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063981
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000010341 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11109769:11111114:-1 None
NM_063981 NCBI Caenorhabditis elegans C09H10.8 (C09H10.8) mRNA, complete cds. None
SNAP00000010336 ENSEMBL cdna:SNAP chromosome:CEL140:II:11110127:11111082:-1 None
C09H10.8 ENSEMBL cdna:known chromosome:CEL140:II:11109526:11111082:-1 gene:C09H10.8 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010335 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11109683-11111079(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09H10.8
Entrez Gene 182480 Entrez gene
SwissProt Q17884 EMBL-EBI
WormBase CE35828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90439 Hypothetical protein C09H10.8 [Caenorhabditis elegans] ref|NP_496382.2| C09H10.8 [Caenorhabditis elegans] 1.0E-157
blast CAA90439 Hypothetical protein C09H10.8 [Caenorhabditis elegans] ref|NP_496382.2| C09H10.8 [Caenorhabditis elegans] 1.0E-125
blast CAA90439 Hypothetical protein C09H10.8 [Caenorhabditis elegans] ref|NP_496382.2| C09H10.8 [Caenorhabditis elegans] 1.0E-100
blast CAE59568 Hypothetical protein CBG02965 [Caenorhabditis briggsae] 2.0E-91
blast CAE59568 Hypothetical protein CBG02965 [Caenorhabditis briggsae] 1.0E-84
Sequence
Target Sequence 
>C. ELEGANS:180757_AT
ggagcacgccatcgacattatatgaatgagggaaatgacaactgcttttgggctccgttt
gcccaacaacttccgatcgccatgagcaaaatgtacatgcgggttgtcacagaggatagc
aaaattcggcgaatattgagaataaggtctagggcagcggagaaaagtgaagaagaagaa
gtttgtgagtcttggagacagttttcctgcatgttaatcgaatcaatgaaacgaggatat
gagggatgtgcaagtgaaaagacacctcttcggttaagcattacaaactcgataatctca
atggcatcgatgcgttcatcacgttcccgatccgcctcccattttctcgaaccgaacatg
tcgccggcaatcggtttgctgtgtgccgtgtgcttttcgttttatagtttttttgttctc
caatgtgtgctcttcttggctcaacagagagcaactcgacgactacaacaactcagccat
catctccaattactccatatcgacgaagaagtatgttccgcgcgggtggagctcttcaaa
ggaatagccaagacttcacagcactacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCACGCCATCGACATTATATGA 159 521 319 Antisense
AAATGACAACTGCTTTTGGGCTCCG 410 117 351 Antisense
GACACCTCTTCGGTTAAGCATTACA 94 367 579 Antisense
TGGCATCGATGCGTTCATCACGTTC 25 547 620 Antisense
TCTCGAACCGAACATGTCGCCGGCA 708 609 663 Antisense
GCAATCGGTTTGCTGTGTGCCGTGT 114 323 685 Antisense
TGCCGTGTGCTTTTCGTTTTATAGT 307 585 702 Antisense
TTTTGTTCTCCAATGTGTGCTCTTC 189 679 729 Antisense
TCATCTCCAATTACTCCATATCGAC 363 621 798 Antisense
GACGAAGAAGTATGTTCCGCGCGGG 661 379 820 Antisense
TAGCCAAGACTTCACAGCACTACGA 236 651 863 Antisense
Sequence Source Affymetrix Proprietary Database