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[180756_at]

Description K06H6.6 /REP_DB=WormBase Gene ID /WP=CE11838 /TR=O17107 /GB=AAB70365.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 24.9
(-2)
A 		36.5
(-1.4)
A 		8
(-3)
A 		112.4
(3)
A 		104
B 40
(2.8)
A 		40.7
(3)
A 		20.7
(-3)
A 		32.7
(0.6)
A 		20
C 34.3
(-1.5)
A 		19.5
(-2.3)
A 		6.6
(-3)
A 		115.6
(3)
M 		109
avr 33.1
(-1.3) 		32.2
(-1.4) 		11.8
(-3) 		86.9
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 22.1
(0.2)
A 		23.2
(0.3)
A 		39.5
(3)
A 		2.6
(-3)
A 		25.3
(0.7)
A 		7.1
(-2.3)
A 		37
B 7.1
(-2.6)
A 		21
(-0.1)
A 		18.7
(-0.6)
A 		4.8
(-3)
A 		38.9
(3)
A 		4.9
(-3)
A 		34
C 6.3
(-0.7)
A 		12.7
(2.8)
A 		2.2
(-3)
A 		4.1
(-1.9)
A 		4.5
(-1.7)
A 		13
(3)
A 		11
avr 11.8
(-0.5) 		19
(1.8) 		20.1
(2.1) 		3.8
(-3) 		22.9
(3) 		8.3
(-1.6) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9.1
(-0.1)
A 		7.9
(-0.6)
A 		2.1
(-3)
A 		16.5
(3)
A 		14
B 12.8
(3)
A 		10
(0.9)
A 		4.8
(-3)
A 		7
(-1.4)
A 		8
C 11.4
(0.2)
A 		5.6
(-1.8)
A 		2.3
(-3)
A 		19.5
(3)
M 		17
avr 11.1
(1.3) 		7.8
(-0.5) 		3.1
(-3) 		14.3
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.1
(-0.4)
A 		8.3
(2.8)
A 		8.6
(3)
A 		0.7
(-3)
A 		7.6
(2.2)
A 		1.7
(-2.2)
A 		8
B 2.5
(-2.5)
A 		7
(-0.6)
A 		4.5
(-1.7)
A 		1.3
(-3)
A 		15.8
(3)
A 		1.8
(-2.8)
A 		15
C 2.3
(-0.2)
A 		3.9
(2.4)
A 		0.5
(-3)
A 		0.8
(-2.5)
A 		1.5
(-1.4)
A 		4.3
(3)
A 		4
avr 3
(-1.3) 		6.4
(1.5) 		4.5
(-0.1) 		0.9
(-3) 		8.3
(3) 		2.6
(-1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15237
Sequence Type Exemplar sequence
Representative Public ID K06H6.6 NCBI
Target Description K06H6.6 /REP_DB=WormBase Gene ID /WP=CE11838 /TR=O17107 /GB=AAB70365.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070852 NCBI Caenorhabditis elegans K06H6.6 (K06H6.6) mRNA, complete cds. 11/11 None
SNAP00000003553 ENSEMBL cdna:SNAP chromosome:CEL140:V:583632:584895:-1 10/11 None
GENEFINDER00000003560 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:583632:585137:-1 11/11 None
K06H6.6 ENSEMBL cdna:known chromosome:CEL140:V:583632:585137:-1 gene:K06H6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:583631-585137(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06H6.6
Entrez Gene 187075 Entrez gene
SwissProt O17107 EMBL-EBI
WormBase CE11838 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70365 Hypothetical protein K06H6.6 [Caenorhabditis elegans] ref|NP_503253.1| K06H6.6 [Caenorhabditis elegans] 0.0
blast AAB70365 Hypothetical protein K06H6.6 [Caenorhabditis elegans] ref|NP_503253.1| K06H6.6 [Caenorhabditis elegans] 1.0E-149
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 1.0E-116
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 1.0E-103
blast CAB01447 Hypothetical protein W07G4.2 [Caenorhabditis elegans] ref|NP_506258.1| W07G4.2 [Caenorhabditis elegans] 5.0E-96
Sequence
Target Sequence 
>C. ELEGANS:180756_AT
gaagtattttccgtcaatgcgcaatgaactcatcggatacctaaagacttctgaaaactt
tggctccttgccaaaatccaatgaaacatcttttgtcacatgcgttcatattcggagagg
cgattttaaaagggttggatttgccgagtcagacgaatggttcattagaaaagccaagga
gtttgtcgagaataaagaagcaacatctaagccttgtagccatgtggtactatttgggga
tgacttgccattcatgaaaaacctttatgaaaatgagtcaacccatttcgtatcagttaa
ctctccgtcggatgatttggtgtatgcaaaaaataactgtgatacagttttaatcacggc
tccgcattcaacatttggctggtggatgggctacttttcaaagggagataaagtttatta
tatggacattcgggagactagggataatgtatacagaaatggaggtctgaacccgtacga
ctattatttgccacattggacaccgctcaaatttgctggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTATTTTCCGTCAATGCGCAAT 167 337 468 Antisense
GACTTCTGAAAACTTTGGCTCCTTG 553 369 513 Antisense
GAAACATCTTTTGTCACATGCGTTC 262 357 550 Antisense
GCAACATCTAAGCCTTGTAGCCATG 70 319 667 Antisense
GAGTCAACCCATTTCGTATCAGTTA 205 399 742 Antisense
TATCAGTTAACTCTCCGTCGGATGA 402 647 758 Antisense
ATACAGTTTTAATCACGGCTCCGCA 562 23 809 Antisense
GCTGGTGGATGGGCTACTTTTCAAA 65 295 845 Antisense
AATGGAGGTCTGAACCCGTACGACT 342 161 925 Antisense
CCCGTACGACTATTATTTGCCACAT 687 253 939 Antisense
TTGGACACCGCTCAAATTTGCTGGC 2 705 963 Antisense
Sequence Source Affymetrix Proprietary Database