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[180755_at]

Description T08B6.1 /REP_DB=WormBase Gene ID /WP=CE17222 /TR=O44531 /GB=AAB94153.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 10      6grp_cgc > 44      6grp_cgc_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 16.9
(-1.8)
A 		10.3
(-2.4)
A 		2.9
(-3)
A 		74.2
(3)
A 		71
B 6
(-3)
A 		6.4
(-3)
A 		7.1
(-2.9)
A 		55.2
(3)
A 		49
C 17.8
(-2.9)
A 		28.3
(-1.9)
A 		16.6
(-3)
A 		78.2
(3)
M 		62
avr 13.6
(-2.5) 		15
(-2.4) 		8.9
(-3) 		69.2
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.3
(-3)
A 		15.6
(0.9)
A 		22.6
(3)
A 		4.8
(-2.3)
A 		3.3
(-2.7)
A 		5.1
(-2.2)
A 		20
B 14.3
(0.4)
A 		4.6
(-2.4)
A 		23.5
(3)
A 		2.4
(-3)
A 		6.6
(-1.8)
A 		9.3
(-1)
A 		21
C 27.9
(1.4)
A 		35.6
(3)
A 		14.8
(-1.5)
A 		7.6
(-3)
A 		18.2
(-0.7)
A 		15.9
(-1.2)
A 		28
avr 14.8
(0.9) 		18.6
(2.3) 		20.3
(3) 		4.9
(-3) 		9.4
(-1.2) 		10.1
(-1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.2
(0.2)
A 		2.2
(-2.2)
A 		0.8
(-3)
A 		10.9
(3)
A 		10
B 1.9
(-2.8)
A 		1.6
(-3)
A 		1.6
(-3)
A 		11.8
(3)
A 		10
C 5.9
(-2.9)
A 		8.1
(-1.1)
A 		5.8
(-3)
A 		13.2
(3)
M 		7
avr 4.7
(-1.7) 		4
(-2.2) 		2.7
(-3) 		12
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.4
(-3)
A 		5.5
(3)
A 		4.9
(2.3)
A 		1.2
(-2.1)
A 		1
(-2.3)
A 		1.3
(-1.9)
A 		5
B 5
(2.2)
A 		1.5
(-1.9)
A 		5.7
(3)
A 		0.6
(-3)
A 		2.7
(-0.5)
A 		3.5
(0.4)
A 		5
C 10.3
(2.6)
A 		10.9
(3)
A 		3.8
(-1.5)
A 		1.5
(-3)
A 		5.9
(-0.2)
A 		5.3
(-0.6)
A 		9
avr 5.2
(2) 		6
(3) 		4.8
(1.5) 		1.1
(-3) 		3.2
(-0.4) 		3.4
(-0.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180755_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11010
Sequence Type Exemplar sequence
Representative Public ID T08B6.1 NCBI
Target Description T08B6.1 /REP_DB=WormBase Gene ID /WP=CE17222 /TR=O44531 /GB=AAB94153.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068264 NCBI Caenorhabditis elegans T08B6.1 (T08B6.1) mRNA, complete cds. 11/11 None
SNAP00000024941 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4886738:4887348:-1 11/11 None
GENEFINDER00000024948 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4887058:4887348:-1 10/11 None
T08B6.1 ENSEMBL cdna:known chromosome:CEL140:IV:4886771:4887348:-1 gene:T08B6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4886743-4887354(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08B6.1
Entrez Gene 188275 Entrez gene
SwissProt O44531 EMBL-EBI
WormBase CE30300 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500665 T08B6.1 [Caenorhabditis elegans] gb|AAB94153.2| Hypothetical protein T08B6.1 [Caenorhabditis elegans] 2.0E-39
blast NP_500665 T08B6.1 [Caenorhabditis elegans] gb|AAB94153.2| Hypothetical protein T08B6.1 [Caenorhabditis elegans] 2.0E-32
Sequence
Target Sequence 
>C. ELEGANS:180755_AT
tgactccacaagccatcaacaacaatcacaccagcgaggaggccgagatggctctcttaa
aacttgctcaatgtgccagcgctcttgtcctctccggattcaaattccgtaacaggaaag
tcacagttaccacaaagaggaccaacaagccaggattcggaaagacaacggcttcacgtt
cacaatgtcatgcgaagccacgtccgggacaaagagtgacaattgtcaaatatgtcaatg
ttaatgctacattctcagaaatattctatacagtttctgaatctcttttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACTCCACAAGCCATCAACAACAA 18 571 14 Antisense
AACAATCACACCAGCGAGGAGGCCG 276 133 34 Antisense
AGCGAGGAGGCCGAGATGGCTCTCT 32 79 46 Antisense
GATGGCTCTCTTAAAACTTGCTCAA 306 407 60 Antisense
AAAACTTGCTCAATGTGCCAGCGCT 343 131 72 Antisense
TCTTGTCCTCTCCGGATTCAAATTC 289 617 96 Antisense
GAGGACCAACAAGCCAGGATTCGGA 110 405 150 Antisense
GATTCGGAAAGACAACGGCTTCACG 147 405 167 Antisense
GGCTTCACGTTCACAATGTCATGCG 262 537 183 Antisense
TGCGAAGCCACGTCCGGGACAAAGA 97 581 204 Antisense
ATACAGTTTCTGAATCTCTTTTGAT 287 25 281 Antisense
Sequence Source Affymetrix Proprietary Database