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[180754_at]

Description C31H1.5 /REP_DB=WormBase Gene ID /WP=CE04125 /TR=Q18339 /GB=AAA83608.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 2.6
(-3)
A 		16.5
(-2.2)
A 		23.4
(-1.8)
A 		102.8
(3)
P 		100
B 2.6
(-3)
A 		23.9
(0.8)
A 		28.2
(1.6)
P 		35.9
(3)
A 		33
C 27.1
(-1.5)
A 		5.8
(-3)
A 		12.4
(-2.5)
A 		89.2
(3)
P 		83
avr 10.8
(-3) 		15.4
(-2.6) 		21.3
(-2) 		76
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 498
1 2 3 4 5 6 range
A 23.7
(-2.5)
A 		2.1
(-3)
A 		45.2
(-2)
A 		3.2
(-3)
A 		201.2
(1.5)
P 		266.1
(3)
P 		264
B 8.6
(-2.9)
A 		27.2
(-2.7)
A 		4.6
(-3)
A 		6.7
(-3)
A 		169.2
(-0.5)
P 		401.3
(3)
P 		397
C 1.9
(-3)
A 		16.5
(-2.8)
A 		11
(-2.9)
A 		11.2
(-2.9)
A 		197.6
(-0.6)
P 		499.9
(3)
P 		498
avr 11.4
(-2.9) 		15.3
(-2.9) 		20.3
(-2.8) 		7
(-3) 		189.3
(-0.1) 		389.1
(3) 		382
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 0.9
(-3)
A 		3.6
(-1.9)
A 		6.1
(-0.8)
A 		15
(3)
P 		14
B 0.8
(-3)
A 		5.9
(1.4)
A 		6.5
(2)
P 		7.7
(3)
A 		7
C 9
(0.3)
A 		1.7
(-3)
A 		4.3
(-1.8)
A 		15
(3)
P 		13
avr 3.6
(-3) 		3.7
(-2.9) 		5.6
(-1.7) 		12.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 4.4
(-2.7)
A 		0.8
(-3)
A 		9.8
(-2.2)
A 		0.8
(-3)
A 		60.7
(2.6)
P 		64.8
(3)
P 		64
B 3
(-2.9)
A 		9.1
(-2.7)
A 		1.1
(-3)
A 		1.8
(-3)
A 		68.7
(-0.3)
P 		149.6
(3)
P 		149
C 0.7
(-3)
A 		5
(-2.8)
A 		2.8
(-2.9)
A 		2.3
(-2.9)
A 		63.9
(-0.7)
P 		167.4
(3)
P 		167
avr 2.7
(-2.9) 		5
(-2.8) 		4.6
(-2.9) 		1.6
(-3) 		64.4
(-0) 		127.3
(3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10401
Sequence Type Exemplar sequence
Representative Public ID C31H1.5 NCBI
Target Description C31H1.5 /REP_DB=WormBase Gene ID /WP=CE04125 /TR=Q18339 /GB=AAA83608.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068463(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068463 NCBI Caenorhabditis elegans C31H1.5 (C31H1.5) mRNA, complete cds. 10/11 None
SNAP00000016608 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5794978:5796747:-1 10/11 None
GENEFINDER00000016613 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5794978:5796747:-1 10/11 None
C31H1.5 ENSEMBL cdna:known chromosome:CEL140:IV:5794978:5796747:-1 gene:C31H1.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5794983-5796753(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31H1.5
Entrez Gene 183097 Entrez gene
SwissProt Q18339 EMBL-EBI
WormBase CE34723 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83608 Hypothetical protein C31H1.5 [Caenorhabditis elegans] ref|NP_500864.2| C31H1.5 [Caenorhabditis elegans] 1.0E-152
blast CAE72654 Hypothetical protein CBG19861 [Caenorhabditis briggsae] 3.0E-60
blast CAE57669 Hypothetical protein CBG00662 [Caenorhabditis briggsae] 4.0E-15
Sequence
Target Sequence 
>C. ELEGANS:180754_AT
agttgacagcatttcacccagcaacaaatcaaactgcaaatcgtgaatacaatagattgt
ataaatcttgtcttggatttagaaagcctttgatcagttgtgcctatagtcatttagttt
gtactttgaaaatgcgtccattggatagatatgatcaatcatatattcaatgtcgggagg
atcttatcaactgtcttgaggatactacttcatttttgaaaatgagagaaaataaagagt
gttcgaatcaactggatattgcattgtatgcaattaaacatgagaactccaaatatatta
caaacaattattccctacagatcaaaaatgttgagccattttcagatgcaaaactatctg
gacttccattttatttacattacaaagaagatacaactaccacctcgactactgacacta
cgactaccatttctaccactaaaaacaccactgtgacacagaaaccgaaaacaaatacca
caaactcaactgtcactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGACAGCATTTCACCCAGCAAC 226 65 434 Antisense
AAAGCCTTTGATCAGTTGTGCCTAT 362 125 516 Antisense
GTCGGGAGGATCTTATCAACTGTCT 95 473 605 Antisense
AACTGTCTTGAGGATACTACTTCAT 281 143 622 Antisense
CAAACAATTATTCCCTACAGATCAA 585 191 734 Antisense
GATGCAAAACTATCTGGACTTCCAT 198 411 778 Antisense
GGACTTCCATTTTATTTACATTACA 337 523 793 Antisense
AAAGAAGATACAACTACCACCTCGA 599 123 817 Antisense
CACCTCGACTACTGACACTACGACT 424 201 834 Antisense
CTGACACTACGACTACCATTTCTAC 6 239 845 Antisense
ATACCACAAACTCAACTGTCACTAT 698 21 908 Antisense
Sequence Source Affymetrix Proprietary Database