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[180751_s_at]

Description F55F8.4 /REP_DB=WormBase Gene ID /WP=CE11194 /TR=P91342 /GB=AAB37808.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 85      6grp_total > 56      4grp_total > 31      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 597
1 2 3 4 range
A 1114.1
(3)
P 		677.6
(-3)
P 		735.6
(-2.2)
P 		919.8
(0.3)
P 		437
B 1274.9
(3)
P 		750.2
(-2.6)
P 		714
(-3)
P 		960.1
(-0.4)
P 		561
C 1047.5
(3)
P 		770.8
(-2.9)
P 		765.2
(-3)
P 		777.2
(-2.7)
P 		282
avr 1145.5
(3) 		732.9
(-3) 		738.3
(-2.9) 		885.7
(-0.8) 		413

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 620
1 2 3 4 5 6 range
A 870.1
(1.7)
P 		771.9
(-0.3)
P 		768.4
(-0.4)
P 		733.4
(-1.1)
P 		636.3
(-3)
P 		935.4
(3)
P 		299
B 878.5
(-0.2)
P 		744.4
(-1.9)
P 		909.4
(0.2)
P 		678.6
(-2.7)
P 		651.5
(-3)
P 		1138.6
(3)
P 		487
C 715.4
(-1.3)
P 		813.7
(-0.4)
P 		737.5
(-1.1)
P 		753.9
(-1)
P 		542.7
(-3)
P 		1162.6
(3)
P 		620
avr 821.3
(-0.3) 		776.7
(-0.9) 		805.1
(-0.5) 		722
(-1.6) 		610.2
(-3) 		1078.9
(3) 		469
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 405.6
(3)
P 		147.1
(-2.7)
P 		192.3
(-1.7)
P 		134.6
(-3)
P 		271
B 406.6
(3)
P 		185.3
(-2.5)
P 		165.4
(-3)
P 		204.6
(-2)
P 		241
C 346.8
(3)
P 		221.6
(-0.5)
P 		266.7
(0.8)
P 		131
(-3)
P 		216
avr 386.3
(3) 		184.7
(-2.3) 		208.1
(-1.7) 		156.7
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 160.4
(-3)
P 		274.5
(3)
P 		167.3
(-2.6)
P 		186
(-1.7)
P 		192
(-1.3)
P 		227.7
(0.5)
P 		114
B 305.7
(0.1)
P 		247.8
(-1.3)
P 		220.8
(-2)
P 		179.7
(-3)
P 		264.7
(-0.9)
P 		424.6
(3)
P 		245
C 265.2
(-0.1)
P 		248.3
(-0.6)
P 		187.7
(-2.1)
P 		151.6
(-3)
P 		175.6
(-2.4)
P 		389.2
(3)
P 		238
avr 243.8
(-0.5) 		256.9
(-0.1) 		191.9
(-2.3) 		172.4
(-3) 		210.8
(-1.7) 		347.2
(3) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180751_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1512
Sequence Type Exemplar sequence
Representative Public ID F55F8.4 NCBI
Target Description F55F8.4 /REP_DB=WormBase Gene ID /WP=CE11194 /TR=P91342 /GB=AAB37808.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059253(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059253 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-326) (tag-326) mRNA, complete cds. 11/11 None
SNAP00000024468 ENSEMBL cdna:SNAP chromosome:CEL140:I:5653919:5655754:-1 11/11 None
GENEFINDER00000024477 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5653919:5655823:-1 11/11 None
F55F8.4.2 ENSEMBL cdna:known chromosome:CEL140:I:5653836:5655862:-1 gene:F55F8.4 11/11 None
F55F8.4.1 ENSEMBL cdna:known chromosome:CEL140:I:5653836:5655850:-1 gene:F55F8.4 11/11 None
F55F8.4.3 ENSEMBL cdna:known chromosome:CEL140:I:5653846:5655860:-1 gene:F55F8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5653918-5655823(-) 94.53 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-326
Ensembl F55F8.4
Entrez Gene 172225 Entrez gene
SwissProt P91342 EMBL-EBI
WormBase CE11194 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19620_AT zinc knuckle (CCHC-type) family protein at
ATH1-121501:254614_AT zinc knuckle (CCHC-type) family protein at
CANINE:1602185_AT similar to CBF1 interacting corepressor isoform 2 cfa
CANINE:1593935_S_AT similar to CBF1 interacting corepressor isoform 2 cfa
CANINE:1586069_X_AT similar to CBF1 interacting corepressor isoform 2 cfa
CANINE:1586068_S_AT similar to CBF1 interacting corepressor isoform 2 cfa
CANINE_2:CFA.11147.1.A1_AT similar to CBF1 interacting corepressor isoform 2 cfa
CANINE_2:CFAAFFX.20449.1.S1_AT similar to CBF1 interacting corepressor isoform 2 cfa
CANINE_2:CFAAFFX.20461.1.S1_AT similar to CBF1 interacting corepressor isoform 2 cfa
CANINE_2:CFAAFFX.20465.1.S1_AT similar to CBF1 interacting corepressor isoform 2 cfa
CANINE_2:CFAAFFX.20465.1.S1_S_AT similar to CBF1 interacting corepressor isoform 2 cfa
DROSOPHILA_2:1640282_AT dm
DROSGENOME1:149020_AT dm
CHICKEN:GGAAFFX.13084.1.S1_AT CBF1 interacting corepressor gga
CHICKEN:GGAAFFX.9063.1.S1_S_AT CBF1 interacting corepressor gga
CHICKEN:GGAAFFX.9154.1.S1_S_AT CBF1 interacting corepressor gga
HG-U133A:209571_AT CBF1 interacting corepressor hs
HG-U133_PLUS_2:209571_AT CBF1 interacting corepressor hs
HG-U133A_2:209571_AT CBF1 interacting corepressor hs
HG-FOCUS:209571_AT CBF1 interacting corepressor hs
HU35KSUBA:U03644_AT CBF1 interacting corepressor hs
HUGENEFL:U03644_AT CBF1 interacting corepressor hs
HU35KSUBB:RC_AA199649_AT CBF1 interacting corepressor hs
HU35KSUBD:RC_R53998_S_AT CBF1 interacting corepressor hs
U133_X3P:G476104_3P_AT CBF1 interacting corepressor hs
HG-U95AV2:37980_AT CBF1 interacting corepressor hs
HG-U95B:43417_R_AT CBF1 interacting corepressor hs
MG-U74BV2:113078_AT RIKEN cDNA 1700023B02 gene mm
MG-U74BV2:162572_I_AT RIKEN cDNA 1700023B02 gene mm
MOE430A:1423375_AT RIKEN cDNA 1700023B02 gene mm
MOUSE430A_2:1423375_AT RIKEN cDNA 1700023B02 gene mm
MOUSE430_2:1423375_AT RIKEN cDNA 1700023B02 gene mm
RG-U34C:AA801048_AT similar to CBF1 interacting corepressor (predicted) rn
RAE230A:1374408_AT similar to CBF1 interacting corepressor (predicted) rn
RAT230_2:1374408_AT similar to CBF1 interacting corepressor (predicted) rn
RAE230B:1386229_AT similar to CBF1 interacting corepressor (predicted) rn
RAT230_2:1386229_AT similar to CBF1 interacting corepressor (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB37808 Temporarily assigned gene name protein 326 [Caenorhabditis elegans] ref|NP_491654.1| Temporarily Assigned Gene name family member (tag-326) [Caenorhabditis elegans] 1.0E-170
blast AAB37808 Temporarily assigned gene name protein 326 [Caenorhabditis elegans] ref|NP_491654.1| Temporarily Assigned Gene name family member (tag-326) [Caenorhabditis elegans] 1.0E-156
blast CAE68943 Hypothetical protein CBG14923 [Caenorhabditis briggsae] 1.0E-109
Sequence
Target Sequence 
>C. ELEGANS:180751_S_AT
agacggcgaagtccatcgtcgattcggaaggaaagtcagcgtgttcgtaaacattcacca
gaacaaaaaagaaatggccgtcatgattcacgatcagtgtcccctgttagaagacgtcgt
tctccgtctcctgacaatcgtcagctgggttcgagaaaacaatactcgccactgcgacgt
cgccaatcatctccgatggttgcatcaccaagaagacgtagatctccatcaccagaacga
cagcgcaagagacgttcaccatccgattccccgccaacaaggcgtctttctacgtcaccg
atccgacgtcgtagaagtccatcgcccaacaagttgcctgtgagaaggcgtcgtcatgat
tccggatcgcctgatcgtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACGGCGAAGTCCATCGTCGATTC 127 71 1270 Antisense
TCACGATCAGTGTCCCCTGTTAGAA 710 625 1357 Antisense
AAACAATACTCGCCACTGCGACGTC 287 129 1426 Antisense
TCGCCAATCATCTCCGATGGTTGCA 242 599 1449 Antisense
TAGATCTCCATCACCAGAACGACAG 677 651 1488 Antisense
GACAGCGCAAGAGACGTTCACCATC 74 369 1508 Antisense
GCCAACAAGGCGTCTTTCTACGTCA 294 277 1542 Antisense
GTCACCGATCCGACGTCGTAGAAGT 421 463 1563 Antisense
CCATCGCCCAACAAGTTGCCTGTGA 496 271 1588 Antisense
TGAGAAGGCGTCGTCATGATTCCGG 409 569 1610 Antisense
TGATTCCGGATCGCCTGATCGTGAT 462 563 1626 Antisense
Sequence Source Affymetrix Proprietary Database