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[180750_at]

Description F59D6.6 /REP_DB=WormBase Gene ID /WP=CE11486 /TR=O16342 /GB=AAB65881.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.9
(-3)
A 		2.5
(1)
A 		0.9
(-3)
A 		3.3
(3)
A 		2
B 0.6
(-3)
A 		0.7
(-2.9)
A 		2.1
(-1)
A 		5.2
(3)
A 		5
C 2.2
(-2.2)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		12.9
(3)
A 		12
avr 1.2
(-3) 		1.3
(-2.9) 		1.3
(-2.9) 		7.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.1
(0.7)
A 		0.3
(-3)
A 		0.4
(-2.5)
A 		0.6
(-1.6)
A 		1.6
(3)
A 		0.7
(-1.2)
A 		1
B 0.4
(-0.6)
A 		0.5
(0.6)
A 		0.3
(-1.8)
A 		0.7
(3)
A 		0.6
(1.8)
A 		0.2
(-3)
A 		1
C 0.5
(-3)
A 		1.6
(-0.6)
A 		1.6
(-0.6)
A 		0.8
(-2.3)
A 		3.2
(3)
A 		0.9
(-2.1)
A 		3
avr 0.7
(-2.5) 		0.8
(-2) 		0.8
(-2) 		0.7
(-2.5) 		1.8
(3) 		0.6
(-3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.3
(-1)
A 		0.5
(3)
A 		0.2
(-3)
A 		0.5
(3)
A 		0
B 0.2
(-3)
A 		0.2
(-3)
A 		0.5
(-1)
A 		1.1
(3)
A 		1
C 0.7
(-1.5)
A 		0.2
(-3)
A 		0.3
(-2.7)
A 		2.2
(3)
A 		2
avr 0.4
(-2.4) 		0.3
(-3) 		0.3
(-3) 		1.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.2
(-1.5)
A 		0.1
(-3)
A 		0.1
(-3)
A 		0.1
(-3)
A 		0.5
(3)
A 		0.2
(-1.5)
A 		0
B 0.1
(-3)
A 		0.2
(3)
A 		0.1
(-3)
A 		0.2
(3)
A 		0.2
(3)
A 		0.1
(-3)
A 		0
C 0.2
(-3)
A 		0.5
(-0.8)
A 		0.4
(-1.5)
A 		0.2
(-3)
A 		1
(3)
A 		0.3
(-2.3)
A 		1
avr 0.2
(-3) 		0.3
(-1.5) 		0.2
(-3) 		0.2
(-3) 		0.6
(3) 		0.2
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180750_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15227
Sequence Type Exemplar sequence
Representative Public ID F59D6.6 NCBI
Target Description F59D6.6 /REP_DB=WormBase Gene ID /WP=CE11486 /TR=O16342 /GB=AAB65881.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071428 NCBI Caenorhabditis elegans F59D6.6 (F59D6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000018897 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3034303:3037507:-1 11/11 None
F59D6.6 ENSEMBL cdna:known chromosome:CEL140:V:3034957:3037516:-1 gene:F59D6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018890 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3034956-3037516(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59D6.6
Entrez Gene 186616 Entrez gene
SwissProt O16342 EMBL-EBI
WormBase CE11486 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65881 Hypothetical protein F59D6.6 [Caenorhabditis elegans] ref|NP_503829.1| F59D6.6 [Caenorhabditis elegans] 0.0
blast AAG24169 Hypothetical protein K12D9.12 [Caenorhabditis elegans] ref|NP_503824.1| K12D9.12 [Caenorhabditis elegans] 1.0E-111
blast CAC35854 Hypothetical protein ZC482.2 [Caenorhabditis elegans] emb|CAB07716.2| Hypothetical protein ZC482.2 [Caenorhabditis elegans] ref|NP_499656.1| ZC482.2 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-8
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.6E-21
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-8
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 9.6E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503829.1 2 12-29,513-535
F59D6.6 2 12-29,513-535
GENEFINDER00000018897 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:180750_AT
gtgacgatgctgggacaatatttgatacggattattctatagatattgttaattgtgact
tcaaatcaatgagtgatttggcaaataattgtgcagtaattttaggaaacttggtaattg
agtctggagatgaagagcatgtatcgaaattggacggtgtttcacatatttttggagcgc
tgataattcgaaatactaaactgaaacacttgaattttctaaaaaatctacaatatattg
ctgcaattagtgaagagataccagtgattcaaataatttctaacccaaatttaaaaaaag
caaatcttccggaagtttcaaacattttagccaggggtaaacggataggaatagttcaag
acaatcacccagatattttcaaagctaagaactgtaacatgtttgtttctatttctaaga
ccatgttccaagagtatagagttaacttaacttataatggtagtcaatgtggcgacagag
ttgacattaatatctcggcgagaactggaaattcgatagcttttatattcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACGATGCTGGGACAATATTTGA 355 483 1034 Antisense
GGACGGTGTTTCACATATTTTTGGA 333 521 1185 Antisense
ATTTTTGGAGCGCTGATAATTCGAA 580 13 1201 Antisense
GCAAATCTTCCGGAAGTTTCAAACA 634 315 1333 Antisense
GGAATAGTTCAAGACAATCACCCAG 106 533 1381 Antisense
AATCACCCAGATATTTTCAAAGCTA 24 171 1396 Antisense
GTTTCTATTTCTAAGACCATGTTCC 420 449 1438 Antisense
GACCATGTTCCAAGAGTATAGAGTT 557 381 1452 Antisense
GGTAGTCAATGTGGCGACAGAGTTG 40 505 1492 Antisense
AGTTGACATTAATATCTCGGCGAGA 581 63 1512 Antisense
AATTCGATAGCTTTTATATTCATCA 684 177 1543 Antisense
Sequence Source Affymetrix Proprietary Database