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[180748_at]

Description T06E6.12 /REP_DB=WormBase Gene ID /WP=CE18214 /TR=O62363 /GB=CAB03322.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 19      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 22.7
(-0.8)
A 		3.9
(-3)
A 		6.6
(-2.7)
A 		54.6
(3)
A 		51
B 13.9
(-1.8)
A 		13.2
(-1.8)
A 		1.8
(-3)
A 		60.1
(3)
A 		58
C 3.8
(-3)
A 		57.4
(3)
M 		14.6
(-1.8)
A 		36
(0.6)
A 		54
avr 13.5
(-2.2) 		24.8
(-0.6) 		7.7
(-3) 		50.2
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 4.7
(-2.7)
A 		7.7
(-2.3)
A 		56.8
(3)
A 		2
(-3)
A 		14.5
(-1.6)
A 		1.6
(-3)
A 		55
B 32.7
(3)
A 		25.4
(-0.3)
A 		22.1
(-1.8)
A 		23.3
(-1.3)
A 		27.2
(0.5)
A 		19.5
(-3)
A 		13
C 35.2
(3)
A 		16.3
(-0.4)
A 		1.9
(-2.9)
A 		8.2
(-1.8)
A 		1.5
(-3)
A 		21.3
(0.5)
A 		34
avr 24.2
(2) 		16.5
(-1) 		26.9
(3) 		11.2
(-3) 		14.4
(-1.8) 		14.1
(-1.9) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8.3
(3)
A 		0.8
(-3)
A 		1.7
(-2.3)
A 		8
(2.8)
A 		8
B 4.4
(-1.1)
A 		3.3
(-1.6)
A 		0.4
(-3)
A 		12.8
(3)
A 		12
C 1.2
(-3)
A 		16.5
(3)
M 		5.1
(-1.5)
A 		6.1
(-1.1)
A 		15
avr 4.6
(-1) 		6.9
(1.1) 		2.4
(-3) 		9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.9
(-2.8)
A 		2.7
(-1.9)
A 		12.4
(3)
A 		0.5
(-3)
A 		4.4
(-1)
A 		0.4
(-3)
A 		12
B 11.4
(3)
A 		8.5
(0.1)
A 		5.4
(-3)
A 		6.2
(-2.2)
A 		11.1
(2.7)
A 		7.3
(-1.1)
A 		6
C 13
(3)
A 		5
(-0.8)
A 		0.5
(-3)
A 		1.7
(-2.4)
A 		0.5
(-3)
A 		7.1
(0.2)
A 		13
avr 8.4
(3) 		5.4
(-0.2) 		6.1
(0.5) 		2.8
(-3) 		5.3
(-0.3) 		4.9
(-0.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180748_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13538
Sequence Type Exemplar sequence
Representative Public ID T06E6.12 NCBI
Target Description T06E6.12 /REP_DB=WormBase Gene ID /WP=CE18214 /TR=O62363 /GB=CAB03322.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T06E6.12 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15422406:15424092:1 gene:T06E6.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027748 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15422519-15424092(+) 100.0 100.0
Public Domain and Genome References
Ensembl T06E6.12
Sequence
Target Sequence 
>C. ELEGANS:180748_AT
gatgattttcaattacaccttcgttggaacgtttatgctacccacgtttttgaatactcc
tgatcagttacaagcaattgacttagcattcaagaaagttccaaatcttccagtcaaaat
tcgttccatggattttttcatctgggcgacagattatccattatttctgggatcttttgt
ttttatcaccgttttaggacttgctgaacttattcccatgattatgataactgattggaa
tgtgagaacatcaatgaagaaatctacacagtcacggcaaacaatgcagcttcagttgaa
atttttattggctctttatgcacagagcggcgcatttttcctgacttgtctcattcccta
cgtatacatactgtattcttgctttacaagttattacaaccccattgcaaacaacttcat
attcatttttgtggcatcgcgtggatgtgtttgcacaataattctgctctctgcaaataa
accttataggaaagctgtggtggatatcttcgtgataggtgacacctcaatcggttgttt
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATTTTCAATTACACCTTCGTT 536 409 294 Antisense
GTTTATGCTACCCACGTTTTTGAAT 129 447 324 Antisense
ATCTTCCAGTCAAAATTCGTTCCAT 60 31 398 Antisense
GTTCCATGGATTTTTTCATCTGGGC 387 441 416 Antisense
GACTTGCTGAACTTATTCCCATGAT 618 371 491 Antisense
GAAATCTACACAGTCACGGCAAACA 35 363 552 Antisense
GCATTTTTCCTGACTTGTCTCATTC 112 309 625 Antisense
TGTCTCATTCCCTACGTATACATAC 139 559 640 Antisense
TATTCATTTTTGTGGCATCGCGTGG 269 663 713 Antisense
GCACAATAATTCTGCTCTCTGCAAA 476 317 746 Antisense
GGTGACACCTCAATCGGTTGTTTCA 366 501 811 Antisense
Sequence Source Affymetrix Proprietary Database