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[180746_at] serine/threonine kinase /// ---

Description K09C6.1 /REP_DB=WormBase Gene ID /WP=CE11988 /TR=O16947 /GB=AAB70668.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.1
(-2.8)
A 		3.9
(-0.8)
A 		0.8
(-3)
A 		9.3
(3)
A 		9
B 5.4
(1.4)
A 		1.2
(-3)
A 		1.2
(-3)
A 		6.9
(3)
A 		6
C 0.6
(-3)
A 		13.5
(3)
A 		3.1
(-1.8)
A 		10.6
(1.7)
A 		13
avr 2.4
(-2.4) 		6.2
(0.8) 		1.7
(-3) 		8.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.8
(3)
A 		1
(-2.7)
A 		2.6
(-1.7)
A 		2.4
(-1.8)
A 		0.6
(-3)
A 		2.4
(-1.8)
A 		9
B 0.7
(-3)
A 		1.5
(-2.7)
A 		15.7
(3)
A 		3.6
(-1.8)
A 		0.8
(-3)
A 		1
(-2.9)
A 		15
C 0.8
(-2.7)
A 		1.4
(-2)
A 		0.6
(-2.9)
A 		5.8
(3)
A 		3.8
(0.7)
A 		0.5
(-3)
A 		5
avr 3.8
(0) 		1.3
(-3) 		6.3
(3) 		3.9
(0.1) 		1.7
(-2.5) 		1.3
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.4
(-2)
A 		0.8
(0)
A 		0.2
(-3)
A 		1.4
(3)
A 		1
B 1.7
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		1.5
(2.1)
A 		1
C 0.2
(-3)
A 		3.9
(3)
A 		1.1
(-1.5)
A 		1.8
(-0.4)
A 		4
avr 0.8
(-1.5) 		1.7
(3) 		0.5
(-3) 		1.6
(2.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.8
(3)
A 		0.4
(-2.3)
A 		0.6
(-1.5)
A 		0.6
(-1.5)
A 		0.2
(-3)
A 		0.6
(-1.5)
A 		2
B 0.3
(-3)
A 		0.5
(-2.7)
A 		3.8
(3)
A 		1
(-1.8)
A 		0.3
(-3)
A 		0.4
(-2.8)
A 		4
C 0.3
(-1.9)
A 		0.4
(-1.4)
A 		0.1
(-3)
A 		1.2
(3)
A 		1.2
(3)
A 		0.2
(-2.5)
A 		1
avr 0.8
(-0.8) 		0.4
(-3) 		1.5
(3) 		0.9
(-0.3) 		0.6
(-1.9) 		0.4
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180746_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15220
Sequence Type Exemplar sequence
Representative Public ID K09C6.1 NCBI
Target Description K09C6.1 /REP_DB=WormBase Gene ID /WP=CE11988 /TR=O16947 /GB=AAB70668.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070944, NM_065499
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000011694 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4425246:4429468:-1 None
SNAP00000012276 ENSEMBL cdna:SNAP chromosome:CEL140:V:859069:859802:1 None
GENEFINDER00000012286 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:859069:861889:1 None
NM_065499 NCBI Caenorhabditis elegans C28A5.6 (C28A5.6) mRNA, complete cds. A 
K09C6.1 ENSEMBL cdna:known chromosome:CEL140:V:858950:861889:1 gene:K09C6.1 None
NM_070944 NCBI Caenorhabditis elegans K09C6.1 (K09C6.1) mRNA, complete cds. None
C28A5.6 ENSEMBL cdna:known chromosome:CEL140:III:4423748:4429468:-1 gene:C28A5.6 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:858987-862297(+) 100.0 100.0
chrIII:4409984-4426857(-) 90.94 90.94
Public Domain and Genome References
Gene Title serine/threonine kinase

Ensembl C28A5.6
K09C6.1
Entrez Gene 175579 Entrez gene
178591 Entrez gene
SwissProt Q18274 EMBL-EBI
O16947 EMBL-EBI
WormBase CE00673 Wormbase
CE33145 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA83631 Hypothetical protein C28A5.6 [Caenorhabditis elegans] emb|CAA83602.1| Hypothetical protein C28A5.6 [Caenorhabditis elegans] ref|NP_497900.1| C28A5.6 [Caenorhabditis elegans] 0.0
blast AAB70668 Hypothetical protein K09C6.1 [Caenorhabditis elegans] ref|NP_503345.2| K09C6.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180746_AT
tgagttattttcattgctgaatcatactttgctctttgctccgcattcatatgctttaca
tcatttttcatcatttgtggaagtttcgagatatccattggaatcggacgatgatcacct
cgaaagttgggcggaacttttggaggagcatagaatttccttggatttccttggattaag
ccttttcggctgtaattcaaatgcagtatccaatttctgtgttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGTTATTTTCATTGCTGAATCAT 490 567 2010 Antisense
GCTGAATCATACTTTGCTCTTTGCT 234 297 2025 Antisense
CTCTTTGCTCCGCATTCATATGCTT 44 231 2041 Antisense
GCATTCATATGCTTTACATCATTTT 680 307 2052 Antisense
TACATCATTTTTCATCATTTGTGGA 187 645 2066 Antisense
GGAAGTTTCGAGATATCCATTGGAA 555 531 2088 Antisense
TTGGAATCGGACGATGATCACCTCG 11 709 2107 Antisense
GTTGGGCGGAACTTTTGGAGGAGCA 439 437 2135 Antisense
GAATTTCCTTGGATTTCCTTGGATT 699 323 2162 Antisense
TTCCTTGGATTAAGCCTTTTCGGCT 376 691 2176 Antisense
GCAGTATCCAATTTCTGTGTTTTCA 141 313 2212 Antisense
Sequence Source Affymetrix Proprietary Database