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[180745_at] 7TM chemoreceptor, srw family

Description C44C3.6 /REP_DB=WormBase Gene ID /WP=CE08712 /TR=P91162 /GB=AAG23986.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 35      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 41
(-3)
A 		83.2
(3)
A 		55.4
(-1)
A 		72.5
(1.5)
A 		42
B 67.4
(1.3)
A 		73.3
(3)
A 		52.7
(-3)
A 		61.1
(-0.6)
A 		21
C 44.6
(-2.4)
A 		97
(3)
A 		38.6
(-3)
A 		78
(1)
A 		58
avr 51
(-2.6) 		84.5
(3) 		48.9
(-3) 		70.5
(0.6) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 87.7
(3)
A 		82.3
(2.6)
A 		60.4
(1)
A 		9.8
(-2.7)
A 		6.4
(-3)
A 		16.9
(-2.2)
A 		81
B 51.7
(2.1)
A 		24
(-2.7)
A 		22.4
(-3)
A 		56.6
(3)
A 		49.4
(1.7)
A 		49.5
(1.8)
A 		34
C 34.5
(-0.5)
A 		46.2
(0.6)
A 		73.9
(3)
A 		73.5
(3)
A 		24.7
(-1.3)
A 		5.6
(-3)
A 		68
avr 58
(3) 		50.8
(1.7) 		52.2
(2) 		46.6
(1) 		26.8
(-2.5) 		24
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14.9
(0.4)
A 		18.1
(3)
A 		14.5
(0.1)
A 		10.6
(-3)
A 		8
B 21.5
(3)
A 		18.1
(0.8)
A 		12.2
(-3)
A 		13
(-2.5)
A 		9
C 14.7
(-2.4)
A 		27.9
(3)
A 		13.4
(-2.9)
A 		13.2
(-3)
A 		15
avr 17
(0.1) 		21.4
(3) 		13.4
(-2.3) 		12.3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 16.2
(0.1)
A 		29.3
(3)
A 		13.1
(-0.5)
A 		2.5
(-2.9)
A 		1.9
(-3)
A 		4.1
(-2.5)
A 		27
B 18
(2.1)
A 		8
(-1.9)
A 		5.4
(-3)
A 		15
(0.9)
A 		20.1
(3)
A 		18.4
(2.3)
A 		15
C 12.8
(0.9)
A 		14.1
(1.3)
A 		18.8
(3)
A 		14.8
(1.6)
A 		8
(-0.8)
A 		1.9
(-3)
A 		17
avr 15.7
(2.1) 		17.1
(3) 		12.4
(-0.1) 		10.8
(-1.2) 		10
(-1.7) 		8.1
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180745_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15190
Sequence Type Exemplar sequence
Representative Public ID C44C3.6 NCBI
Target Description C44C3.6 /REP_DB=WormBase Gene ID /WP=CE08712 /TR=P91162 /GB=AAG23986.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071411 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-117) (srw-117) mRNA, complete cds. 11/11 None
C44C3.6 ENSEMBL cdna:known chromosome:CEL140:V:2981979:2983278:-1 gene:C44C3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011849 4/11 Cross Hyb Matching Probes None
GENEFINDER00000011854 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2981978-2983278(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-117
Ensembl C44C3.6
Entrez Gene 183444 Entrez gene
SwissProt Q8IFY0 EMBL-EBI
WormBase CE08712 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN73867 Serpentine receptor, class w protein 117 [Caenorhabditis elegans] ref|NP_503812.1| Serpentine Receptor, class W family member (srw-117) [Caenorhabditis elegans] 0.0
blast AAG24162 Serpentine receptor, class w protein 120 [Caenorhabditis elegans] ref|NP_503816.2| Serpentine Receptor, class W family member (srw-120) [Caenorhabditis elegans] 1.0E-140
blast AAG24164 Serpentine receptor, class w protein 119 [Caenorhabditis elegans] ref|NP_503818.1| Serpentine Receptor, class W family member (srw-119) [Caenorhabditis elegans] 1.0E-133
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503812.1 7 38-60,127-144,159-178,185-207,227-249,274-296,311-333
C44C3.6 7 38-60,127-144,159-178,185-207,227-249,274-296,311-333
Sequence
Target Sequence 
>C. ELEGANS:180745_AT
gagtttgcgcagcaagcttgcctatttcaattttcaagttttttgaaactcagttttttg
ttgtgactgagagcctatatgtttgtgctctccaaggaacttattatttagctgctatgt
cccactttttcatgaaaaacaatggatttatcgccaaatacttttccttattcaattcgt
ttgtgtcagatatcattccatgtctactgctaccaattgtaaccgtgttacttgttatgg
atttatggaaaaccgccaagaaaagagcaaatattgtgtctgttagtaataaaaacaatt
ttcggagcaaaactggattagtgttctgcgttactatcatgtttttccttgttgaatttc
cttatggatcgagcttgggggctgtgtggatgtataaaaatgcaccgggcatgcaacaaa
tattggctcacgttgggttcattttctcaatgctaatcactttgaacacttgcactcatt
tttttatttgtctgctcatatcatctcaataccgaaaaacaatcatccacgtcttgtcct
gtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTGCGCAGCAAGCTTGCCTAT 430 399 512 Antisense
GCCTATATGTTTGTGCTCTCCAAGG 697 279 584 Antisense
TGCTATGTCCCACTTTTTCATGAAA 526 579 624 Antisense
ATCGCCAAATACTTTTCCTTATTCA 549 37 661 Antisense
TCCATGTCTACTGCTACCAATTGTA 31 591 708 Antisense
TCTGCGTTACTATCATGTTTTTCCT 620 609 836 Antisense
GATCGAGCTTGGGGGCTGTGTGGAT 509 417 878 Antisense
TATTGGCTCACGTTGGGTTCATTTT 697 665 932 Antisense
AACACTTGCACTCATTTTTTTATTT 520 135 976 Antisense
TTATTTGTCTGCTCATATCATCTCA 181 679 995 Antisense
AATCATCCACGTCTTGTCCTGTGGA 404 171 1032 Antisense
Sequence Source Affymetrix Proprietary Database