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[180744_at]

Description F22F7.6 /REP_DB=WormBase Gene ID /WP=CE17696 /TR=Q9GZF1 /GB=AAF99911.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 53      6grp_total > 20      4grp_total > 51      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 56.9
(-3)
A 		93.4
(1.1)
P 		109.7
(3)
P 		78.7
(-0.5)
A 		53
B 60.8
(-0.1)
P 		103.7
(3)
M 		73
(0.8)
A 		19.8
(-3)
A 		84
C 111.2
(1.2)
P 		132
(3)
P 		71.5
(-2.2)
A 		61.8
(-3)
A 		70
avr 76.3
(-0.6) 		109.7
(3) 		84.7
(0.3) 		53.4
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 88.8
(-0.2)
P 		97.1
(0.4)
P 		138.8
(3)
P 		60.6
(-2)
A 		44.3
(-3)
P 		98.2
(0.4)
P 		95
B 44.3
(-3)
P 		128.7
(3)
P 		108.4
(1.6)
P 		74.1
(-0.9)
P 		44.9
(-3)
A 		56.1
(-2.2)
P 		84
C 86.8
(-1.9)
A 		116.1
(2.2)
P 		115.1
(2)
P 		122.2
(3)
P 		109
(1.2)
P 		78.9
(-3)
P 		43
avr 73.3
(-2.2) 		114
(2.3) 		120.8
(3) 		85.6
(-0.9) 		66.1
(-3) 		77.7
(-1.7) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 20.7
(0.2)
A 		20.3
(0.1)
P 		28.7
(3)
P 		11.5
(-3)
A 		17
B 19.4
(1.3)
P 		25.6
(3)
M 		16.9
(0.6)
A 		4.2
(-3)
A 		21
C 36.8
(2.7)
P 		38
(3)
P 		24.9
(0.2)
A 		10.4
(-3)
A 		28
avr 25.6
(2.3) 		28
(3) 		23.5
(1.6) 		8.7
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 16.4
(-2.1)
P 		34.5
(3)
P 		30.2
(1.8)
P 		15.4
(-2.4)
A 		13.4
(-3)
P 		23.9
(-0)
P 		21
B 15.4
(-3)
P 		42.8
(3)
P 		26.3
(-0.6)
P 		19.6
(-2.1)
P 		18.2
(-2.4)
A 		20.9
(-1.8)
P 		27
C 32.2
(1.2)
A 		35.4
(3)
P 		29.3
(-0.4)
P 		24.6
(-3)
P 		35.3
(2.9)
P 		26.4
(-2)
P 		11
avr 21.3
(-2.5) 		37.6
(3) 		28.6
(-0.1) 		19.9
(-3) 		22.3
(-2.2) 		23.7
(-1.7) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180744_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15059
Sequence Type Exemplar sequence
Representative Public ID F22F7.6 NCBI
Target Description F22F7.6 /REP_DB=WormBase Gene ID /WP=CE17696 /TR=Q9GZF1 /GB=AAF99911.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071174(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071174 NCBI Caenorhabditis elegans F22F7.6 (F22F7.6) mRNA, complete cds. 11/11 None
SNAP00000032280 ENSEMBL cdna:SNAP chromosome:CEL140:V:2115383:2119229:-1 11/11 None
GENEFINDER00000032290 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2115383:2118472:-1 11/11 None
F22F7.6 ENSEMBL cdna:known chromosome:CEL140:V:2115383:2118176:-1 gene:F22F7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2115382-2118176(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22F7.6
Entrez Gene 184865 Entrez gene
SwissProt Q9GZF1 EMBL-EBI
WormBase CE35286 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99911 Hypothetical protein F22F7.6 [Caenorhabditis elegans] ref|NP_503575.2| F22F7.6 [Caenorhabditis elegans] 0.0
blast AAF99911 Hypothetical protein F22F7.6 [Caenorhabditis elegans] ref|NP_503575.2| F22F7.6 [Caenorhabditis elegans] 1.0E-178
blast AAF99911 Hypothetical protein F22F7.6 [Caenorhabditis elegans] ref|NP_503575.2| F22F7.6 [Caenorhabditis elegans] 1.0E-173
blast CAB07674 Hypothetical protein F21H7.10 [Caenorhabditis elegans] emb|CAB07595.1| Hypothetical protein F21H7.10 [Caenorhabditis elegans] ref|NP_507102.1| F21H7.10 [Caenorhabditis elegans] 1.0E-141
blast CAB07674 Hypothetical protein F21H7.10 [Caenorhabditis elegans] emb|CAB07595.1| Hypothetical protein F21H7.10 [Caenorhabditis elegans] ref|NP_507102.1| F21H7.10 [Caenorhabditis elegans] 1.0E-126
blast CAE17897 Hypothetical protein K08H2.9 [Caenorhabditis elegans] ref|NP_001024774.1| K08H2.9 [Caenorhabditis elegans] 1.0E-124
blast CAB07674 Hypothetical protein F21H7.10 [Caenorhabditis elegans] emb|CAB07595.1| Hypothetical protein F21H7.10 [Caenorhabditis elegans] ref|NP_507102.1| F21H7.10 [Caenorhabditis elegans] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:180744_AT
tcagagcggatcaatcctacctccgaagccatctgtcaggacccttccaactatatccga
gcaaccttatgagaaatttggctcgccagggagccaagtcggatattcattttattatgg
atgcagatatgattgttagtgagggattcgcgcggaaactcaaaaaagtggcaaatgaga
tgatcgacggaaaaagtaaaaaagtattggcaattcgaagattcgaatcggttaatggaa
cttatttgcctagaactcactttgagttgaagcaatctatggcttattccaacggatatg
aatgggaagttcaagtaattcttcaccgtaacgacccctataacgcggcctatttcccgt
ccagaatcaaagttatgcactctctgatttacgccctttgtcgtgctggttacacgtttc
atgttccgtcacacgttttcgatgttcatgaagggattaagcatactaatacaatttatt
cgaaagccacaattgctcatcaggaagcttatgcgatggacatagccggagccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGAGCGGATCAATCCTACCTCCG 403 623 350 Antisense
TCAGGACCCTTCCAACTATATCCGA 646 621 385 Antisense
CTCGCCAGGGAGCCAAGTCGGATAT 83 233 431 Antisense
GTTAGTGAGGGATTCGCGCGGAAAC 47 445 484 Antisense
GGAACTTATTTGCCTAGAACTCACT 642 529 586 Antisense
CCTATTTCCCGTCCAGAATCAAAGT 396 267 698 Antisense
AGTTATGCACTCTCTGATTTACGCC 470 63 720 Antisense
GCCCTTTGTCGTGCTGGTTACACGT 355 287 742 Antisense
GTTACACGTTTCATGTTCCGTCACA 576 445 758 Antisense
TTCCGTCACACGTTTTCGATGTTCA 98 699 773 Antisense
TGCGATGGACATAGCCGGAGCCAGA 480 577 861 Antisense
Sequence Source Affymetrix Proprietary Database