[Home] | [Total List]

[180743_at]

Description F53B1.5 /REP_DB=WormBase Gene ID /WP=CE04645 /TR=Q20699 /GB=AAB52652.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 60      4grp_high_8_8 > 46      6grp_total > 71      4grp_total > 50      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 81.3
(-1.9)
P 		179.6
(3)
P 		130.3
(0.5)
P 		59.9
(-3)
P 		120
B 75
(-1.1)
P 		187.7
(3)
P 		178.9
(2.7)
P 		23.9
(-3)
A 		164
C 49.3
(-3)
P 		161.5
(2.9)
P 		162.7
(3)
P 		105.2
(-0)
P 		113
avr 68.5
(-2.7) 		176.3
(3) 		157.3
(2) 		63
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 93.6
(-1.4)
P 		118.5
(0)
P 		145.5
(1.6)
P 		170.2
(3)
P 		132.9
(0.9)
P 		65.1
(-3)
A 		105
B 103.1
(-1)
P 		113.3
(-0.6)
P 		161.3
(1.5)
P 		196.6
(3)
P 		100.6
(-1.1)
P 		55.9
(-3)
P 		141
C 124.2
(0.8)
P 		143.6
(1.8)
P 		131.8
(1.2)
P 		168.6
(3)
P 		116.2
(0.4)
P 		46.9
(-3)
A 		122
avr 107
(-0.5) 		125.1
(0.4) 		146.2
(1.4) 		178.5
(3) 		116.6
(-0) 		56
(-3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 29.6
(1.1)
P 		39
(3)
P 		34.1
(2)
P 		8.8
(-3)
P 		30
B 23.9
(-0.3)
P 		46.4
(3)
P 		41.5
(2.3)
P 		5.1
(-3)
A 		41
C 16.3
(-3)
P 		46.4
(1.5)
P 		56.7
(3)
P 		17.7
(-2.8)
P 		40
avr 23.3
(-0.7) 		43.9
(3) 		44.1
(3) 		10.5
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 17.3
(-2.7)
P 		42.2
(2.8)
P 		31.7
(0.5)
P 		43.2
(3)
P 		40.1
(2.3)
P 		15.8
(-3)
A 		27
B 35.9
(-0.1)
P 		37.7
(0.2)
P 		39.2
(0.5)
P 		52.1
(3)
P 		40.9
(0.9)
P 		20.8
(-3)
P 		31
C 46
(3)
P 		43.8
(2.6)
P 		33.6
(0.5)
P 		33.9
(0.6)
P 		37.6
(1.3)
P 		15.7
(-3)
A 		30
avr 33.1
(0.7) 		41.2
(2.6) 		34.8
(1.1) 		43.1
(3) 		39.5
(2.2) 		17.4
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180743_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18213
Sequence Type Exemplar sequence
Representative Public ID F53B1.5 NCBI
Target Description F53B1.5 /REP_DB=WormBase Gene ID /WP=CE04645 /TR=Q20699 /GB=AAB52652.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075991(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075991 NCBI Caenorhabditis elegans F53B1.6 (F53B1.6) mRNA, complete cds. 9/11 A 
GENEFINDER00000022997 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2111772:2118149:-1 9/11 None
SNAP00000022991 ENSEMBL cdna:SNAP chromosome:CEL140:X:2114816:2115661:-1 10/11 None
F53B1.6 ENSEMBL cdna:known chromosome:CEL140:X:2114623:2118251:-1 gene:F53B1.6 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2114721-2115661(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53B1.6
Entrez Gene 180526 Entrez gene
SwissProt Q20700 EMBL-EBI
WormBase CE31180 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4289 subtilase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52649 Hypothetical protein F53B1.6 [Caenorhabditis elegans] ref|NP_508392.2| F53B1.6 [Caenorhabditis elegans] 0.0
blast AAB52650 Hypothetical protein F53B1.4 [Caenorhabditis elegans] ref|NP_508390.1| F53B1.4 [Caenorhabditis elegans] 1.0E-178
blast CAE68352 Hypothetical protein CBG14085 [Caenorhabditis briggsae] 1.0E-173
blast AAB52649 Hypothetical protein F53B1.6 [Caenorhabditis elegans] ref|NP_508392.2| F53B1.6 [Caenorhabditis elegans] 9.0E-94
blast AAB52649 Hypothetical protein F53B1.6 [Caenorhabditis elegans] ref|NP_508392.2| F53B1.6 [Caenorhabditis elegans] 5.0E-80
blast T16445 hypothetical protein F53B1.5 - Caenorhabditis elegans 2.0E-55
blast T16445 hypothetical protein F53B1.5 - Caenorhabditis elegans 7.0E-52
blast CAE68351 Hypothetical protein CBG14084 [Caenorhabditis briggsae] 7.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 2.3E-18
Pfam IPR001509 EMBL-EBI NAD-dependent epimerase/dehydratase 2.6E-76
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 7.7E-15
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 1.3E-14
Sequence
Target Sequence 
>C. ELEGANS:180743_AT
tcagataacgctccaaaatcgcaggaagtatacgagactagaatgaaggagttgagcaca
gaactgacaaaaattctcaaacaactggagggcacaaaattggaaaaacagcccgaagtt
cacgttttgagaaatggttctgccgaacaaactattgatgggcaatacacatttatcgca
tcgatcacattggtcaaggatggagataaaagtattcttgttgacaccgggcttggtact
aatatcaatgcgagaacggaacttatcaaatcattagaaatgcatggtttgagccctgcg
gatgtggacattgttgtgagtacccatgggcacccagatcatgttggagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGATAACGCTCCAAAATCGCAGG 352 623 25 Antisense
AACAGCCCGAAGTTCACGTTTTGAG 387 129 131 Antisense
GGTTCTGCCGAACAAACTATTGATG 52 507 160 Antisense
GGGCAATACACATTTATCGCATCGA 316 493 184 Antisense
ATCGCATCGATCACATTGGTCAAGG 539 37 199 Antisense
AAGTATTCTTGTTGACACCGGGCTT 538 157 234 Antisense
GACACCGGGCTTGGTACTAATATCA 639 367 247 Antisense
AATGCATGGTTTGAGCCCTGCGGAT 479 163 303 Antisense
GAGCCCTGCGGATGTGGACATTGTT 505 383 315 Antisense
TGTTGTGAGTACCCATGGGCACCCA 597 563 336 Antisense
TGGGCACCCAGATCATGTTGGAGGA 120 555 351 Antisense
Sequence Source Affymetrix Proprietary Database