[Home] | [Total List]

[180742_at]

Description K02F3.7 /REP_DB=WormBase Gene ID /WP=CE01353 /TR=Q21149 /GB=AAK21419.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 12      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 51.5
(0.2)
A 		41.8
(-2.1)
A 		37.7
(-3)
A 		63.9
(3)
A 		26
B 64.6
(1.1)
A 		34.2
(-1.3)
A 		12.8
(-3)
A 		87.8
(3)
P 		75
C 18
(-3)
A 		45.6
(-0.9)
A 		32.9
(-1.9)
A 		96.1
(3)
P 		78
avr 44.7
(-1.1) 		40.5
(-1.6) 		27.8
(-3) 		82.6
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 49.4
(-0.6)
A 		12.9
(-3)
A 		49.2
(-0.6)
A 		64.8
(0.5)
P 		102.4
(3)
P 		77.1
(1.3)
A 		90
B 50.2
(-0.7)
A 		76.8
(1.2)
A 		16.9
(-3)
A 		81.6
(1.5)
A 		102.4
(3)
P 		40
(-1.4)
A 		86
C 15.7
(-3)
A 		17.7
(-2.9)
A 		35.9
(-1.9)
A 		126
(2.8)
A 		130.7
(3)
P 		43.4
(-1.6)
A 		115
avr 38.4
(-2.7) 		35.8
(-2.9) 		34
(-3) 		90.8
(1.4) 		111.8
(3) 		53.5
(-1.5) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.8
(3)
A 		9.1
(-3)
A 		9.9
(-2.5)
A 		9.4
(-2.8)
A 		10
B 20.6
(3)
A 		8.4
(-1.2)
A 		3
(-3)
A 		18.7
(2.4)
P 		18
C 6
(-3)
A 		13.1
(1.2)
A 		11.5
(0.2)
A 		16.2
(3)
P 		10
avr 15.1
(3) 		10.2
(-1.2) 		8.1
(-3) 		14.8
(2.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 9.1
(-2)
A 		4.6
(-3)
A 		10.7
(-1.6)
A 		16.4
(-0.3)
P 		30.9
(3)
P 		18.8
(0.2)
A 		26
B 17.5
(-0.9)
A 		25.5
(0.4)
A 		4.1
(-3)
A 		21.6
(-0.2)
A 		41.6
(3)
P 		14.9
(-1.3)
A 		38
C 5.8
(-2.9)
A 		5.4
(-3)
A 		9.1
(-2.4)
A 		25.3
(0.2)
A 		42.3
(3)
P 		14.5
(-1.5)
A 		37
avr 10.8
(-2.4) 		11.8
(-2.2) 		8
(-3) 		21.1
(-0.4) 		38.3
(3) 		16.1
(-1.4) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180742_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8351
Sequence Type Exemplar sequence
Representative Public ID K02F3.7 NCBI
Target Description K02F3.7 /REP_DB=WormBase Gene ID /WP=CE01353 /TR=Q21149 /GB=AAK21419.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064869 NCBI Caenorhabditis elegans K02F3.7 (K02F3.7) mRNA, complete cds. 11/11 None
SNAP00000008336 ENSEMBL cdna:SNAP chromosome:CEL140:III:835779:837861:-1 11/11 None
GENEFINDER00000008350 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:835881:841314:-1 10/11 None
K02F3.7 ENSEMBL cdna:known chromosome:CEL140:III:835779:837773:-1 gene:K02F3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:835778-837773(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02F3.7
Entrez Gene 186904 Entrez gene
SwissProt Q21149 EMBL-EBI
WormBase CE38842 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497270 K02F3.7 [Caenorhabditis elegans] pir||T16529 hypothetical protein K02F3.7 - Caenorhabditis elegans 0.0
blast AAK21419 Hypothetical protein K02F3.7 [Caenorhabditis elegans] 0.0
blast CAE56757 Hypothetical protein CBG24557 [Caenorhabditis briggsae] 0.0
blast NP_497270 K02F3.7 [Caenorhabditis elegans] pir||T16529 hypothetical protein K02F3.7 - Caenorhabditis elegans 1.0E-156
blast NP_497270 K02F3.7 [Caenorhabditis elegans] pir||T16529 hypothetical protein K02F3.7 - Caenorhabditis elegans 1.0E-153
blast CAE56757 Hypothetical protein CBG24557 [Caenorhabditis briggsae] 1.0E-137
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497270.1 1 347-369
K02F3.7 1 347-369
SNAP00000008336 1 402-424
Sequence
Target Sequence 
>C. ELEGANS:180742_AT
caaagacgtccacaacattccaactgttggctccttctgaagacaataagaatgacactg
tcgattttgaaatggaattgaaccaaactacaacaaaaaacgttgataaagtaataactt
tgaagaatggaacaacagttcatctaattgcggcgccaccacttccaaagcaaactaatt
caagagatcaagttctaaaagatgccgatcaatcagctcccaatcttccacgcgtgaaaa
aaactacaggtggtgcagcagttccagtattttcggacagtgtgttctccaatgcattag
atcaatacaactctttaaccgactctcgaggaatcctgcatcgccctcgtagtagatcac
cattcactaaaccagggctctgggagccgaatccagatgacccacataatcgcgatcatg
ctaacaaatactattatcacccggaatccgtgaacgtggattggctccagggccaaatcg
cttatggtgcacattggccgtgccagctgctggagttggaggtactgatgggtttagtgc
tattcactttccctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAGACGTCCACAACATTCCAACT 270 191 512 Antisense
AAAAGATGCCGATCAATCAGCTCCC 179 133 708 Antisense
GGTGCAGCAGTTCCAGTATTTTCGG 530 501 763 Antisense
GACAGTGTGTTCTCCAATGCATTAG 459 369 787 Antisense
ATACAACTCTTTAACCGACTCTCGA 298 25 816 Antisense
CGACTCTCGAGGAATCCTGCATCGC 632 251 831 Antisense
ATCACCATTCACTAAACCAGGGCTC 334 21 867 Antisense
GGGAGCCGAATCCAGATGACCCACA 77 495 893 Antisense
AATACTATTATCACCCGGAATCCGT 708 171 938 Antisense
ATCGCTTATGGTGCACATTGGCCGT 13 37 988 Antisense
GGTTTAGTGCTATTCACTTTCCCTC 425 505 1042 Antisense
Sequence Source Affymetrix Proprietary Database