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[180741_at]

Description F36H9.5 /REP_DB=WormBase Gene ID /WP=CE09971 /TR=O16621 /GB=AAB66093.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 62      6grp_total > 82      4grp_total > 58      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 232.6
(-1)
P 		415.6
(3)
P 		339.5
(1.3)
P 		140
(-3)
P 		276
B 262.3
(-0.3)
P 		431.7
(3)
P 		419.4
(2.8)
P 		119
(-3)
P 		313
C 242.8
(-1.1)
P 		361.2
(1.7)
P 		415
(3)
P 		160.1
(-3)
P 		255
avr 245.9
(-0.6) 		402.8
(3) 		391.3
(2.7) 		139.7
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 494
1 2 3 4 5 6 range
A 363
(-0.9)
P 		533.8
(1.3)
P 		397
(-0.5)
P 		636.8
(2.7)
P 		660.7
(3)
P 		203.5
(-3)
P 		457
B 233.5
(-2.6)
P 		655.9
(2.9)
P 		536.9
(1.3)
P 		664.8
(3)
P 		557
(1.6)
P 		202.1
(-3)
P 		463
C 316.6
(-1.1)
P 		526.7
(1.7)
P 		478.6
(1)
P 		595.7
(2.6)
P 		627.5
(3)
P 		170.8
(-3)
P 		457
avr 304.4
(-1.5) 		572.1
(2.2) 		470.8
(0.8) 		632.4
(3) 		615.1
(2.8) 		192.1
(-3) 		440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 84.7
(2.5)
P 		90.2
(3)
P 		88.7
(2.9)
P 		20.5
(-3)
P 		70
B 83.7
(1.3)
P 		106.6
(3)
P 		97.2
(2.3)
P 		25.4
(-3)
P 		81
C 80.4
(-0.3)
P 		103.8
(0.9)
P 		144.6
(3)
P 		27
(-3)
P 		118
avr 82.9
(1.1) 		100.2
(2.3) 		110.2
(3) 		24.3
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 66.9
(-2.3)
P 		189.9
(2.6)
P 		86.5
(-1.5)
P 		161.5
(1.5)
P 		199.4
(3)
P 		49.5
(-3)
P 		150
B 81.2
(-2.8)
P 		218.3
(2.7)
P 		130.4
(-0.8)
P 		176.1
(1)
P 		226.3
(3)
P 		75.4
(-3)
P 		151
C 117.3
(-0.5)
P 		160.7
(1.3)
P 		121.8
(-0.3)
P 		119.8
(-0.4)
P 		203
(3)
P 		57.2
(-3)
P 		146
avr 88.5
(-1.9) 		189.6
(2.2) 		112.9
(-0.9) 		152.5
(0.7) 		209.6
(3) 		60.7
(-3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180741_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15178
Sequence Type Exemplar sequence
Representative Public ID F36H9.5 NCBI
Target Description F36H9.5 /REP_DB=WormBase Gene ID /WP=CE09971 /TR=O16621 /GB=AAB66093.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071102 NCBI Caenorhabditis elegans F36H9.5 (F36H9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000002203 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1779701:1781846:-1 11/11 None
F36H9.5 ENSEMBL cdna:known chromosome:CEL140:V:1779701:1781846:-1 gene:F36H9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002195 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1779700-1781846(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H9.5
Entrez Gene 185391 Entrez gene
SwissProt O16621 EMBL-EBI
WormBase CE09971 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66093 Hypothetical protein F36H9.5 [Caenorhabditis elegans] ref|NP_503503.1| F36H9.5 [Caenorhabditis elegans] 0.0
blast CAE66777 Hypothetical protein CBG12134 [Caenorhabditis briggsae] 1.0E-164
blast AAA27948 Hypothetical protein C14B9.3 [Caenorhabditis elegans] ref|NP_498771.1| C14B9.3 [Caenorhabditis elegans] sp|P34330|YKZ3_CAEEL Hypothetical protein C14B9.3 in chromosome III 4.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503503.1 6 58-80,135-154,174-196,211-233,245-267,282-304
F36H9.5 6 58-80,135-154,174-196,211-233,245-267,282-304
GENEFINDER00000002203 6 58-80,135-154,174-196,211-233,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:180741_AT
tttcggtggctttgtgacttgctgccaatgttgactttaattgagaccaccgcgttagcc
atgtttagcattatcacaatgcacagtgattttaaagaaataaaccatttctgcaaatcc
accttcgcaattgtatcagttgtcaacatgtgtatccccacaattttccattttgtttta
tcaattaacagttcaaagaaagccgaagcaagtattgtatttgtgcgtgcagtttgtgca
gttgtcttcggttactgtgctccacagtatttccagttccatattggatggaccaaggag
tcgttgtgccattcttacattccccgccactttgccatcatggagtacagcctgttcttg
gcctatatcacattccatctcctttcgcttttggatctacaccaccttcaattcatctgc
tatccacgttcttgtagtggagaatgtgagccgctggctccagtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGGTGGCTTTGTGACTTGCTGC 365 671 526 Antisense
CCACCGCGTTAGCCATGTTTAGCAT 348 269 572 Antisense
ATTTCTGCAAATCCACCTTCGCAAT 292 17 632 Antisense
GTATCCCCACAATTTTCCATTTTGT 166 455 677 Antisense
AGTTTGTGCAGTTGTCTTCGGTTAC 406 63 756 Antisense
CTGTGCTCCACAGTATTTCCAGTTC 161 241 780 Antisense
GACCAAGGAGTCGTTGTGCCATTCT 473 383 816 Antisense
GTACAGCCTGTTCTTGGCCTATATC 129 461 870 Antisense
TGGATCTACACCACCTTCAATTCAT 208 551 917 Antisense
ATCTGCTATCCACGTTCTTGTAGTG 451 33 940 Antisense
GAATGTGAGCCGCTGGCTCCAGTCA 96 333 967 Antisense
Sequence Source Affymetrix Proprietary Database