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[180740_at]

Description C14H10.4 /REP_DB=WormBase Gene ID /WP=CE17403 /TR=O62060 /GB=CAA90737.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 02      6grp_cgc > 54      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 5.8
(-2.8)
A 		3.9
(-2.9)
A 		3.1
(-3)
A 		94.3
(3)
A 		91
B 3.2
(-2.4)
A 		7.3
(-0.9)
A 		1.6
(-3)
A 		17.8
(3)
A 		16
C 7.2
(-2.5)
A 		7.1
(-2.5)
A 		2.6
(-3)
A 		56.9
(3)
A 		54
avr 5.4
(-2.7) 		6.1
(-2.6) 		2.4
(-3) 		56.3
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 15.1
(3)
A 		4.4
(-1.6)
A 		5.3
(-1.2)
A 		1.3
(-3)
A 		1.2
(-3)
A 		4.5
(-1.6)
A 		14
B 1.5
(-3)
A 		4.1
(-1.4)
A 		5.4
(-0.6)
A 		2.8
(-2.2)
A 		5.8
(-0.3)
A 		11.2
(3)
A 		10
C 3.6
(-3)
A 		31.3
(3)
A 		4.1
(-2.9)
A 		5.6
(-2.6)
A 		3.9
(-2.9)
A 		13.8
(-0.8)
A 		28
avr 6.7
(-0.9) 		13.3
(3) 		4.9
(-2) 		3.2
(-3) 		3.6
(-2.8) 		9.8
(0.9) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.1
(-2.4)
A 		0.8
(-3)
A 		0.8
(-3)
A 		13.8
(3)
A 		13
B 1
(-1.9)
A 		1.8
(-0.5)
A 		0.4
(-3)
A 		3.8
(3)
A 		3
C 2.4
(-2)
A 		2.1
(-2.2)
A 		0.9
(-3)
A 		9.6
(3)
A 		9
avr 1.8
(-2.2) 		1.6
(-2.4) 		0.7
(-3) 		9.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.8
(3)
A 		1.6
(0.1)
A 		1.2
(-0.8)
A 		0.3
(-3)
A 		0.4
(-2.8)
A 		1.1
(-1.1)
A 		3
B 0.5
(-3)
A 		1.4
(-1.5)
A 		1.3
(-1.7)
A 		0.7
(-2.7)
A 		2.4
(0.1)
A 		4.2
(3)
A 		4
C 1.3
(-2.8)
A 		9.6
(3)
A 		1
(-3)
A 		1.1
(-2.9)
A 		1.3
(-2.8)
A 		4.6
(-0.5)
A 		9
avr 1.5
(-1.6) 		4.2
(3) 		1.2
(-2.1) 		0.7
(-3) 		1.4
(-1.8) 		3.3
(1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180740_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17163
Sequence Type Exemplar sequence
Representative Public ID C14H10.4 NCBI
Target Description C14H10.4 /REP_DB=WormBase Gene ID /WP=CE17403 /TR=O62060 /GB=CAA90737.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077319 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-74) (str-74) mRNA, complete cds. 11/11 None
C14H10.4 ENSEMBL cdna:known chromosome:CEL140:X:10239733:10240967:-1 gene:C14H10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071187 1/11 Cross Hyb Matching Probes A 
SNAP00000009345 1/11 Cross Hyb Matching Probes None
GENEFINDER00000009358 1/11 Cross Hyb Matching Probes None
C45H4.16 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10239732-10240967(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-74
Ensembl C14H10.4
Entrez Gene 182621 Entrez gene
SwissProt O62060 EMBL-EBI
WormBase CE17403 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90737 Hypothetical protein C14H10.4 [Caenorhabditis elegans] ref|NP_509720.1| Seven TM Receptor family member (str-74) [Caenorhabditis elegans] 1.0E-175
blast AAD14692 Seven tm receptor protein 76 [Caenorhabditis elegans] ref|NP_503687.1| Seven TM Receptor family member (str-76) [Caenorhabditis elegans] ref|NP_503660.1| Seven TM Receptor family member (str-265) [Caenorhabditis elegans] gb|AAK68413.1| Hypothetical protein Y19D10A.13 [Caenorhabditis elegans] 1.0E-117
blast CAB03407 Hypothetical protein T23F1.4 [Caenorhabditis elegans] ref|NP_506847.1| Seven TM Receptor family member (str-71) [Caenorhabditis elegans] 3.0E-80
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509720.1 7 15-37,44-66,89-111,131-153,196-218,254-276,286-308
C14H10.4 7 15-37,44-66,89-111,131-153,196-218,254-276,286-308
Sequence
Target Sequence 
>C. ELEGANS:180740_AT
aggaaattcctcgattcattgctcttacatacaatttgaatgaaactataagatggaaca
gtatttattttttcttatccgccgtctccctcatttcaattcattatgctatcatgtttt
acttcggcttgaaaatgcatttcaacatgaaacaacagctgctaaaattttcgtcgaaaa
acaggaaactccaacgtcaatttttcaaggctttaatatttcaaagtataggaccaacgg
tattgttagtcttgccggctgttccagttctgttgtgtccagttgttgcgtcattttttc
acttttttttttcgaaattcagttggcaaactggatggctctattcttttatttgctttt
atccaccatttgatagtatttcttttctgatgattgtaacagaatatcggaacattattc
acgaaagatactggagtctattgtcaggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAAATTCCTCGATTCATTGCTCT 483 55 536 Antisense
TGCTATCATGTTTTACTTCGGCTTG 91 581 642 Antisense
AACAGCTGCTAAAATTTTCGTCGAA 36 137 689 Antisense
ACGGTATTGTTAGTCTTGCCGGCTG 65 97 772 Antisense
CTGTTCCAGTTCTGTTGTGTCCAGT 555 239 794 Antisense
TTGTGTCCAGTTGTTGCGTCATTTT 49 705 808 Antisense
GTTGTTGCGTCATTTTTTCACTTTT 464 437 817 Antisense
ATGGCTCTATTCTTTTATTTGCTTT 426 53 870 Antisense
TTATTTGCTTTTATCCACCATTTGA 476 679 884 Antisense
GATAGTATTTCTTTTCTGATGATTG 445 425 907 Antisense
GATACTGGAGTCTATTGTCAGGAAG 183 425 962 Antisense
Sequence Source Affymetrix Proprietary Database