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[180739_at]

Description F31F4.1 /REP_DB=WormBase Gene ID /WP=CE09821 /TR=O17139 /GB=AAG24085.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 35.8
(0.9)
A 		6.9
(-3)
A 		14.9
(-1.9)
A 		50.9
(3)
A 		44
B 31
(-1.7)
A 		55.5
(0.5)
A 		17.1
(-3)
A 		82.1
(3)
A 		65
C 28.6
(0.5)
A 		8.3
(-3)
A 		15.6
(-1.8)
A 		43.6
(3)
A 		35
avr 31.8
(-0.8) 		23.6
(-1.9) 		15.9
(-3) 		58.9
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 20.5
(2.1)
A 		23
(3)
A 		7.9
(-2.2)
A 		5.5
(-3)
A 		8
(-2.1)
A 		20
(2)
A 		18
B 21.2
(-0.4)
A 		26.4
(0.3)
A 		3.8
(-3)
A 		44.7
(3)
P 		10.4
(-2)
A 		6.6
(-2.6)
A 		41
C 6.5
(-3)
A 		9.9
(-2.1)
A 		27.8
(2.8)
A 		28.5
(3)
A 		16.6
(-0.2)
A 		15.9
(-0.4)
A 		22
avr 16.1
(-1.2) 		19.8
(0.4) 		13.2
(-2.4) 		26.2
(3) 		11.7
(-3) 		14.2
(-2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 13.1
(3)
A 		1.5
(-3)
A 		3.9
(-1.8)
A 		7.5
(0.1)
A 		12
B 9.9
(-0.4)
A 		13.7
(1.3)
A 		4
(-3)
A 		17.5
(3)
A 		14
C 9.5
(3)
A 		2.4
(-3)
A 		5.4
(-0.5)
A 		7.3
(1.1)
A 		7
avr 10.8
(3) 		5.9
(-1.6) 		4.4
(-3) 		10.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.8
(-0.9)
A 		8.2
(3)
A 		1.7
(-2.7)
A 		1.4
(-3)
A 		2.4
(-2.1)
A 		4.9
(0.1)
A 		7
B 7.4
(0.6)
A 		8.8
(1.3)
A 		0.9
(-3)
A 		11.8
(3)
P 		4.2
(-1.2)
A 		2.5
(-2.1)
A 		11
C 2.4
(-3)
A 		3
(-2.2)
A 		7.1
(3)
A 		5.7
(1.2)
A 		5.4
(0.8)
A 		5.3
(0.7)
A 		5
avr 4.5
(-0.8) 		6.7
(3) 		3.2
(-3) 		6.3
(2.3) 		4
(-1.6) 		4.2
(-1.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15158
Sequence Type Exemplar sequence
Representative Public ID F31F4.1 NCBI
Target Description F31F4.1 /REP_DB=WormBase Gene ID /WP=CE09821 /TR=O17139 /GB=AAG24085.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070893 NCBI Caenorhabditis elegans F31F4.1 (F31F4.1) mRNA, complete cds. 11/11 None
F31F4.1 ENSEMBL cdna:known chromosome:CEL140:V:683919:685964:1 gene:F31F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:683918-685964(+) 99.53 100.0
Public Domain and Genome References
Gene Title
Ensembl F31F4.1
Entrez Gene 185163 Entrez gene
SwissProt O17139 EMBL-EBI
WormBase CE09821 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503294 F31F4.1 [Caenorhabditis elegans] gb|AAG24085.1| Hypothetical protein F31F4.1 [Caenorhabditis elegans] 0.0
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 1.0E-102
blast AAC19260 Hypothetical protein ZK1055.2 [Caenorhabditis elegans] ref|NP_504676.1| ZK1055.2 [Caenorhabditis elegans] 1.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503294.1 1 12-34
F31F4.1 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:180739_AT
attgccacggggtcgtatattgcgaggaatacaaaattttcagtggatttgctgaacgag
tttgcaaactatgaagtacgactacctaagagccttcacggctccgataatggagctatc
catatgttcctcgctgaaaaactaacaccaaaatcttctccaaaactcgaaaagtgccga
aaattttacgaaaaatcaaaaagctacgaagacctgttcacattcgaggcatgtattcgt
gatttgctaggagattctatagatttcgggaaaatccgaattttggaaaaaggaacaagc
tgggtgagagacggatggctcacgaaaagtcaatggcacccgggaattgattttatgttg
catggatggaaatcttggcagttgaggggaatcccgcaaaatggactgagaccacttcca
atttcaaaaaatcggtggtatagcccgttttctggaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCCACGGGGTCGTATATTGCGA 320 7 460 Antisense
AGTACGACTACCTAAGAGCCTTCAC 81 61 534 Antisense
AGCCTTCACGGCTCCGATAATGGAG 139 83 550 Antisense
TGGAGCTATCCATATGTTCCTCGCT 328 549 570 Antisense
CACCAAAATCTTCTCCAAAACTCGA 574 201 605 Antisense
GAAGACCTGTTCACATTCGAGGCAT 703 337 667 Antisense
GGCTCACGAAAAGTCAATGGCACCC 248 539 776 Antisense
AATGGCACCCGGGAATTGATTTTAT 148 161 791 Antisense
TCTTGGCAGTTGAGGGGAATCCCGC 506 603 832 Antisense
AATGGACTGAGACCACTTCCAATTT 1 163 859 Antisense
GTGGTATAGCCCGTTTTCTGGAAAT 231 487 894 Antisense
Sequence Source Affymetrix Proprietary Database