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[180738_at]

Description F40A3.7 /REP_DB=WormBase Gene ID /WP=CE10154 /TR=O16268 /GB=AAB65319.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 06      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 162.4
(-0.2)
A 		89.8
(-3)
A 		174
(0.3)
A 		243.2
(3)
P 		153
B 195.1
(0.7)
M 		139.8
(-1.7)
A 		108.5
(-3)
A 		247.7
(3)
P 		139
C 179.5
(0)
M 		66.9
(-3)
A 		163.2
(-0.4)
M 		291
(3)
P 		224
avr 179
(-0) 		98.8
(-3) 		148.6
(-1.2) 		260.6
(3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 226.4
(3)
P 		177.1
(0.8)
P 		141.2
(-0.8)
P 		91.5
(-3)
A 		159.6
(0)
P 		124.8
(-1.5)
P 		135
B 259.4
(3)
P 		176.5
(-0.3)
P 		143.1
(-1.6)
A 		164.9
(-0.8)
M 		109
(-3)
M 		213.5
(1.2)
P 		150
C 208.7
(1.1)
P 		251.2
(3)
P 		156.2
(-1.2)
A 		162.4
(-0.9)
A 		115.5
(-3)
A 		170.6
(-0.6)
P 		136
avr 231.5
(3) 		201.6
(1.3) 		146.8
(-1.9) 		139.6
(-2.3) 		128
(-3) 		169.6
(-0.6) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 59.1
(3)
A 		19.5
(-3)
A 		45.5
(0.9)
A 		35.6
(-0.6)
P 		40
B 62.2
(3)
M 		34.5
(-1.5)
A 		25.1
(-3)
A 		52.8
(1.5)
P 		37
C 59.4
(3)
M 		19.2
(-3)
A 		56.9
(2.6)
M 		49.1
(1.5)
P 		40
avr 60.2
(3) 		24.4
(-3) 		42.5
(0) 		45.8
(0.6) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 41.7
(-0.2)
P 		63
(3)
P 		30.7
(-1.9)
P 		23.2
(-3)
A 		48.2
(0.8)
P 		30.4
(-1.9)
P 		40
B 90.2
(3)
P 		58.7
(-0.4)
P 		34.8
(-3)
A 		43.7
(-2)
M 		44.3
(-2)
M 		79.6
(1.9)
P 		55
C 77.4
(3)
P 		76.6
(2.9)
P 		39.8
(-2)
A 		32.7
(-3)
A 		37.4
(-2.4)
A 		57.1
(0.3)
P 		45
avr 69.8
(3) 		66.1
(2.4) 		35.1
(-2.7) 		33.2
(-3) 		43.3
(-1.3) 		55.7
(0.7) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180738_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11336
Sequence Type Exemplar sequence
Representative Public ID F40A3.7 NCBI
Target Description F40A3.7 /REP_DB=WormBase Gene ID /WP=CE10154 /TR=O16268 /GB=AAB65319.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072633 NCBI Caenorhabditis elegans F40A3.7 (F40A3.7) mRNA, complete cds. 11/11 None
SNAP00000025359 ENSEMBL cdna:SNAP chromosome:CEL140:V:7898221:7900225:-1 9/11 None
GENEFINDER00000025362 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7898221:7902452:-1 11/11 None
F40A3.7 ENSEMBL cdna:known chromosome:CEL140:V:7898221:7902452:-1 gene:F40A3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7898221-7902453(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40A3.7
Entrez Gene 185509 Entrez gene
SwissProt O16268 EMBL-EBI
WormBase CE10154 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65319 Hypothetical protein F40A3.7 [Caenorhabditis elegans] ref|NP_505034.1| F40A3.7 [Caenorhabditis elegans] 0.0
blast CAE73155 Hypothetical protein CBG20548 [Caenorhabditis briggsae] 0.0
blast AAB65319 Hypothetical protein F40A3.7 [Caenorhabditis elegans] ref|NP_505034.1| F40A3.7 [Caenorhabditis elegans] 2.0E-78
blast CAE73155 Hypothetical protein CBG20548 [Caenorhabditis briggsae] 1.0E-75
blast CAE69513 Hypothetical protein CBG15722 [Caenorhabditis briggsae] 1.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505034.1 7 29-51,60-82,102-124,145-167,216-238,272-294,304-326
F40A3.7 7 29-51,60-82,102-124,145-167,216-238,272-294,304-326
SNAP00000025359 3 4-21,54-76,86-108
GENEFINDER00000025362 7 29-51,60-82,102-124,145-167,216-238,272-294,304-326
Sequence
Target Sequence 
>C. ELEGANS:180738_AT
gcaagttggctcatatcttccttatgattattctccccattattcttttattattcctta
acttgacacttctttgggcgttgagaaaacgtcagaagcatttgtcaattggaaaggatt
ttaatgcggatagacgacaaaacgacgttcacatgcaaaaaactgagcacagagtcacgt
taaccgtaacgtttattgtgacaatgttcacattaactaatgggccatcagctctcgtgc
atctagtaatgtatgcaactcatgaggagctctatgatttgactatgatttccagtactc
ttgtaatttgtggaaaggcttctaacttcatcctcttttgcctcggctccaaacacttca
gactccggctgctcaagctgactcgaaagaagataaaccgaaaaatagattctatcactg
gttcacttgttcatacgacaaaacttagcacggcttcatccagacgtacttcaatgccaa
ttcaagagaaaaaacgatcatcatcgtgtgctccactggtagccaagaacagggctctaa
gcactgtcgaaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGTTGGCTCATATCTTCCTTAT 149 321 644 Antisense
ATCTTCCTTATGATTATTCTCCCCA 341 31 658 Antisense
TATTCTCCCCATTATTCTTTTATTA 596 663 672 Antisense
AACTTGACACTTCTTTGGGCGTTGA 419 137 703 Antisense
ATCAGCTCTCGTGCATCTAGTAATG 94 29 870 Antisense
GAAAGGCTTCTAACTTCATCCTCTT 467 361 956 Antisense
GGCTGCTCAAGCTGACTCGAAAGAA 656 539 1010 Antisense
GATTCTATCACTGGTTCACTTGTTC 671 431 1051 Antisense
GCTTCATCCAGACGTACTTCAATGC 620 303 1096 Antisense
GTGTGCTCCACTGGTAGCCAAGAAC 530 487 1149 Antisense
AGGGCTCTAAGCACTGTCGAAACAA 347 57 1174 Antisense
Sequence Source Affymetrix Proprietary Database