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[180737_at]

Description C31B8.1 /REP_DB=WormBase Gene ID /WP=CE08481 /TR=O16908 /GB=AAG23974.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      4grp_high_8_8 > 30      6grp_total > 84      4grp_total > 18      6grp_high1_sub > 04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 66.4
(-3)
P 		83.5
(-1.8)
A 		100.9
(-0.5)
P 		149
(3)
P 		83
B 85.5
(-2)
P 		114.7
(2.2)
P 		78.8
(-3)
A 		120.5
(3)
P 		42
C 69.3
(-0.4)
P 		54.7
(-1.6)
A 		36.4
(-3)
A 		113.7
(3)
P 		77
avr 73.7
(-2.8) 		84.3
(-1.7) 		72
(-3) 		127.7
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 83.9
(0.2)
A 		50.1
(-3)
P 		69.1
(-1.2)
P 		80.6
(-0.1)
P 		111.8
(2.8)
P 		114
(3)
P 		64
B 52.1
(-3)
P 		102.3
(1.9)
P 		91.4
(0.8)
P 		104.6
(2.1)
P 		114.2
(3)
P 		78.7
(-0.4)
P 		62
C 67.2
(-2.7)
P 		71.8
(-2.4)
P 		60.7
(-3)
A 		175.3
(3)
P 		114.1
(-0.2)
P 		93
(-1.3)
P 		115
avr 67.7
(-3) 		74.7
(-2.2) 		73.7
(-2.3) 		120.2
(3) 		113.4
(2.2) 		95.2
(0.1) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 24.2
(1.4)
P 		18.1
(-3)
A 		26.4
(3)
P 		21.8
(-0.3)
P 		8
B 27.3
(2.4)
P 		28.3
(3)
P 		18.3
(-3)
A 		25.7
(1.4)
P 		10
C 22.9
(3)
P 		15.7
(-1.2)
A 		12.7
(-3)
A 		19.2
(0.8)
P 		10
avr 24.8
(3) 		20.7
(-1.3) 		19.1
(-3) 		22.2
(0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 15.5
(-2.9)
A 		17.8
(-2.1)
P 		15.1
(-3)
P 		20.4
(-1.3)
P 		33.7
(3)
P 		27.8
(1.1)
P 		19
B 18.1
(-3)
P 		34
(0.4)
P 		22.2
(-2.1)
P 		27.7
(-1)
P 		46.4
(3)
P 		29.4
(-0.6)
P 		28
C 24.9
(-0.3)
P 		21.9
(-1.2)
P 		15.4
(-3)
A 		35.3
(2.6)
P 		36.9
(3)
P 		31.1
(1.4)
P 		22
avr 19.5
(-2.5) 		24.6
(-1) 		17.6
(-3) 		27.8
(-0.1) 		39
(3) 		29.4
(0.3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15157
Sequence Type Exemplar sequence
Representative Public ID C31B8.1 NCBI
Target Description C31B8.1 /REP_DB=WormBase Gene ID /WP=CE08481 /TR=O16908 /GB=AAG23974.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071394(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071394 NCBI Caenorhabditis elegans C31B8.1 (C31B8.1) mRNA, complete cds. 11/11 None
C31B8.1 ENSEMBL cdna:known chromosome:CEL140:V:2931379:2932815:1 gene:C31B8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035771 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035075 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2931351-2932815(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31B8.1
Entrez Gene 183076 Entrez gene
WormBase CE38946 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503795 C31B8.1 [Caenorhabditis elegans] 4.0E-75
blast AAG23974 Hypothetical protein C31B8.1 [Caenorhabditis elegans] 4.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503795.2 3 48-70,91-113,126-148
C31B8.1 3 48-70,91-113,126-148
Sequence
Target Sequence 
>C. ELEGANS:180737_AT
atttctcaaagactcataccctcatatgaaatatttaacagcttacccatttctgtggat
gctaacttcaaagcgaaatcttcaagggttttttatgactataatagcttgtattggcat
tgtttttatgcttgtcataattttgtttataatattggtagttgaattagatttacaagt
gaatacaatgagccaagcgtcgaataagtatcacaaacggctgctctttgagttcatggt
tcatataatgatcagtttgccgttcttcatcttatcacctttactaatttttttgaaaat
ttttttgaatgacaccgtagacgtttcctttctaacgtctatatcattcgcagttttcac
gtctgcacctattccgtcgatgttggtttttctgctaaaaaataagaagtatagatcatt
tttaattaaactgttccatattccccaaagaaccgaaccacctgcaaaatccattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTCAAAGACTCATACCCTCAT 246 17 531 Antisense
CAGCTTACCCATTTCTGTGGATGCT 617 203 569 Antisense
AACGGCTGCTCTTTGAGTTCATGGT 446 143 746 Antisense
AATGATCAGTTTGCCGTTCTTCATC 246 165 777 Antisense
TTCTTCATCTTATCACCTTTACTAA 683 687 793 Antisense
ATGACACCGTAGACGTTTCCTTTCT 321 43 839 Antisense
TTTCCTTTCTAACGTCTATATCATT 578 669 854 Antisense
ATTCGCAGTTTTCACGTCTGCACCT 652 7 876 Antisense
CTGCACCTATTCCGTCGATGTTGGT 302 237 893 Antisense
TAAACTGTTCCATATTCCCCAAAGA 578 637 957 Antisense
CCGAACCACCTGCAAAATCCATTAT 430 263 983 Antisense
Sequence Source Affymetrix Proprietary Database