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[180736_s_at]

Description Y37A1B.1 /REP_DB=WormBase Gene ID /WP=CE19070 /TR=Q9XTH8 /GB=CAA19496.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 84      6grp_total > 37      4grp_total > 61      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 658.7
(3)
P 		396.8
(-1.6)
P 		607.2
(2.1)
P 		317.7
(-3)
P 		341
B 507
(0.1)
P 		582.5
(3)
P 		473.8
(-1.2)
P 		427.1
(-3)
P 		155
C 637
(2.1)
P 		644.8
(2.2)
P 		695.3
(3)
P 		313.8
(-3)
P 		382
avr 600.9
(3) 		541.4
(1.6) 		592.1
(2.8) 		352.9
(-3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 521
1 2 3 4 5 6 range
A 607.2
(1.4)
P 		698.3
(3)
P 		386.5
(-2.5)
P 		361.2
(-3)
P 		367.5
(-2.9)
P 		627.2
(1.7)
P 		337
B 740.4
(2.3)
P 		691
(1.5)
P 		522.2
(-1.3)
P 		418.3
(-3)
P 		514.6
(-1.4)
P 		785.2
(3)
P 		367
C 746.6
(3)
P 		750
(3)
P 		416.2
(-1.1)
P 		264.1
(-3)
P 		479
(-0.3)
P 		605.1
(1.2)
P 		486
avr 698.1
(2.8) 		713.1
(3) 		441.6
(-1.5) 		347.9
(-3) 		453.7
(-1.3) 		672.5
(2.3) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 239.8
(3)
P 		86.1
(-1.8)
P 		158.7
(0.5)
P 		46.5
(-3)
P 		193
B 161.7
(3)
P 		143.9
(1.5)
P 		109.8
(-1.4)
P 		91
(-3)
P 		71
C 210.8
(2)
P 		185.4
(1.2)
P 		242.3
(3)
P 		52.9
(-3)
P 		189
avr 204.1
(3) 		138.5
(0.2) 		170.3
(1.6) 		63.5
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 111.9
(-2)
P 		248.4
(3)
P 		84.2
(-3)
P 		91.6
(-2.7)
P 		110.9
(-2)
P 		152.7
(-0.5)
P 		164
B 257.6
(1.8)
P 		230
(0.9)
P 		126.8
(-2.5)
P 		110.8
(-3)
P 		209.1
(0.2)
P 		292.8
(3)
P 		182
C 276.8
(3)
P 		228.8
(1.7)
P 		105.9
(-1.6)
P 		53.1
(-3)
P 		155
(-0.3)
P 		202.6
(1)
P 		224
avr 215.4
(2.2) 		235.7
(3) 		105.6
(-2.2) 		85.2
(-3) 		158.3
(-0.1) 		216
(2.2) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180736_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10202
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.1 NCBI
Target Description Y37A1B.1 /REP_DB=WormBase Gene ID /WP=CE19070 /TR=Q9XTH8 /GB=CAA19496.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028263(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028263 NCBI Caenorhabditis elegans Lateral Signaling Target family member (lst-3) (lst-3) mRNA, complete cds. 11/11 None
SNAP00000035579 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14073904:14082993:1 11/11 None
GENEFINDER00000035590 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14072132:14076574:1 11/11 None
Y37A1B.1a ENSEMBL cdna:known chromosome:CEL140:IV:14071517:14076712:1 gene:Y37A1B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178362 2 1 NM_001028263 174939_s_at (11), 180736_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14071524-14076580(+) 95.58 100.0
Public Domain and Genome References
Ensembl Y37A1B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05201 Hypothetical protein Y37A1B.1a [Caenorhabditis elegans] emb|CAA19496.1| Hypothetical protein Y37A1B.1a [Caenorhabditis elegans] ref|NP_001023434.1| Lateral Signaling Target family member (lst-3) [Caenorhabditis elegans] 0.0
blast CAE71770 Hypothetical protein CBG18765 [Caenorhabditis briggsae] 0.0
blast CAD89738 Hypothetical protein Y37A1B.1b [Caenorhabditis elegans] emb|CAD89760.1| Hypothetical protein Y37A1B.1b [Caenorhabditis elegans] ref|NP_001023435.1| Lateral Signaling Target family member (lst-3) [Caenorhabditis elegans] 0.0
blast CAB05197 Hypothetical protein F52B11.1a [Caenorhabditis elegans] ref|NP_001023214.1| F52B11.1a [Caenorhabditis elegans] 0.0
blast CAD89737 Hypothetical protein F52B11.1b [Caenorhabditis elegans] ref|NP_001023215.1| F52B11.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003034 EMBL-EBI DNA-binding SAP 8.2E-13
Pfam IPR003034 EMBL-EBI DNA-binding SAP 8.2E-13
Pfam IPR003034 EMBL-EBI DNA-binding SAP 8.2E-13
Sequence
Target Sequence 
>C. ELEGANS:180736_S_AT
ggcgaagagcatggaaccagctgattcgggagcggcggtaaaatcatcggaagtttctgc
ttcgtcggatggagtcgttattatcaatggatcagcggtgaatgttgtgcagaagatgaa
gctgctgaagcaagttgaaaaggagagagatgaggcgaagagtactgttagtgagcagct
ttcattaatcgagcaacttcgagaagccaaggctgaaatcgacaagaaaaagaaggacat
tgactctcactaccacaagtccaacaagaaattgaatgagacaagtgctcagctgaagtc
cactcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGAAGAGCATGGAACCAGCTGAT 656 541 3060 Antisense
AACCAGCTGATTCGGGAGCGGCGGT 410 147 3074 Antisense
GGGAGCGGCGGTAAAATCATCGGAA 445 495 3087 Antisense
CATCGGAAGTTTCTGCTTCGTCGGA 706 197 3104 Antisense
TCTGCTTCGTCGGATGGAGTCGTTA 491 607 3115 Antisense
GGATCAGCGGTGAATGTTGTGCAGA 187 511 3148 Antisense
GAGTACTGTTAGTGAGCAGCTTTCA 639 399 3219 Antisense
GAAGCCAAGGCTGAAATCGACAAGA 319 345 3262 Antisense
AGAAGGACATTGACTCTCACTACCA 545 75 3290 Antisense
TGACTCTCACTACCACAAGTCCAAC 98 571 3300 Antisense
GTGCTCAGCTGAAGTCCACTCAAGA 89 481 3344 Antisense
Sequence Source Affymetrix Proprietary Database