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[180735_at]

Description T22D1.5 /REP_DB=WormBase Gene ID /WP=CE17249 /TR=Q9GZH6 /GB=AAF98627.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 334
1 2 3 4 range
A 48
(-2.4)
A 		20.9
(-3)
A 		49.7
(-2.4)
A 		299.7
(3)
P 		279
B 80.4
(-2.4)
A 		58.6
(-3)
A 		119.2
(-1.3)
A 		274.1
(3)
P 		216
C 58.2
(-3)
A 		68.2
(-2.8)
A 		100.9
(-2.1)
A 		355.3
(3)
P 		297
avr 62.2
(-2.7) 		49.2
(-3) 		89.9
(-2.1) 		309.7
(3) 		261

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2791
1 2 3 4 5 6 range
A 9.4
(-3)
A 		87.6
(-2.8)
A 		122.9
(-2.8)
P 		913
(-1)
P 		1962.4
(1.2)
P 		2773.8
(3)
P 		2764
B 14.8
(-3)
A 		68.3
(-2.9)
A 		78.2
(-2.9)
P 		622
(-1.6)
P 		2368.1
(2.5)
P 		2573
(3)
P 		2558
C 69
(-3)
A 		68.6
(-3)
A 		197
(-2.7)
P 		786.6
(-1.4)
P 		2800.3
(3)
P 		2570.1
(2.5)
P 		2732
avr 31.1
(-3) 		74.8
(-2.9) 		132.7
(-2.8) 		773.9
(-1.3) 		2376.9
(2.4) 		2639
(3) 		2608
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 17.5
(-1)
A 		4.5
(-3)
A 		13
(-1.7)
A 		43.9
(3)
P 		39
B 25.6
(-1.5)
A 		14.5
(-3)
A 		27.6
(-1.2)
A 		58.4
(3)
P 		44
C 19.3
(-3)
A 		19.6
(-3)
A 		35.2
(-0.7)
A 		59.9
(3)
P 		41
avr 20.8
(-1.8) 		12.9
(-3) 		25.3
(-1.2) 		54.1
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 960
1 2 3 4 5 6 range
A 1.7
(-3)
A 		31.2
(-2.7)
A 		26.8
(-2.8)
P 		231.6
(-1)
P 		592.2
(2.3)
P 		675.3
(3)
P 		674
B 5.1
(-3)
A 		22.7
(-2.9)
A 		19
(-2.9)
P 		164.7
(-2)
P 		962.1
(3)
P 		959.5
(3)
P 		957
C 25.6
(-3)
A 		20.9
(-3)
A 		50.1
(-2.8)
P 		158.2
(-2.1)
P 		906.1
(3)
P 		860.4
(2.7)
P 		885
avr 10.8
(-3) 		24.9
(-2.9) 		32
(-2.8) 		184.8
(-1.7) 		820.1
(2.9) 		831.7
(3) 		821
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9530
Sequence Type Exemplar sequence
Representative Public ID T22D1.5 NCBI
Target Description T22D1.5 /REP_DB=WormBase Gene ID /WP=CE17249 /TR=Q9GZH6 /GB=AAF98627.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068662 NCBI Caenorhabditis elegans T22D1.5 (T22D1.5) mRNA, complete cds. 11/11 None
SNAP00000024007 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6903980:6905383:1 11/11 None
GENEFINDER00000024026 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6903962:6905383:1 11/11 None
T22D1.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:6903934:6905463:1 gene:T22D1.5 11/11 None
T22D1.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:6903937:6905463:1 gene:T22D1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6903967-6905389(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22D1.5
Entrez Gene 177454 Entrez gene
SwissProt Q9GZH6 EMBL-EBI
WormBase CE17249 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98627 Hypothetical protein T22D1.5 [Caenorhabditis elegans] ref|NP_501063.1| T22D1.5 [Caenorhabditis elegans] 0.0
blast CAE71934 Hypothetical protein CBG18998 [Caenorhabditis briggsae] 1.0E-125
blast CAE71934 Hypothetical protein CBG18998 [Caenorhabditis briggsae] 1.0E-123
Sequence
Target Sequence 
>C. ELEGANS:180735_AT
gattcgaatgccatcgccatttactgctacgaaaccggtattccaacaataatcgtcgac
cgaatcttctcgagtaacctagtgcgtcgttcaacgggaaactatctcgatacgaaagaa
gtgacgtggctcatatttgcgatgattgggactgacgagaatcaatcgatcgagtattgg
ttccgcgtccttgatgtgcaatctacaggaatccttcaattggacgacctgcggatgttc
tacgatgccatcacaaagtttcttgtcaataacaatgtgcaatccctgccgttcgaaaac
gctatcgctcaatttcgggacatccttggcacagacaaatggaatctgcaatcattcaaa
aagaactcgcaacttgccttcagagtgatcaatggctttgtctgcgctcttcgctttctt
gagcaggaaatttgtgagaaaacgaacaccgaacgccaagatgatgaggaatttgggatg
gttcggactcgttggcaacgtttgatcgaccacaaatttgacgattactatgctcaatcc
agcacgtcatcatcagggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGAATGCCATCGCCATTTACT 93 433 592 Antisense
AATCGTCGACCGAATCTTCTCGAGT 299 169 642 Antisense
GTAACCTAGTGCGTCGTTCAACGGG 636 459 665 Antisense
ATCGATCGAGTATTGGTTCCGCGTC 162 35 756 Antisense
ATTGGACGACCTGCGGATGTTCTAC 312 3 810 Antisense
ATAACAATGTGCAATCCCTGCCGTT 468 25 860 Antisense
GCTATCGCTCAATTTCGGGACATCC 16 305 892 Antisense
GAACTCGCAACTTGCCTTCAGAGTG 126 347 954 Antisense
GAGTGATCAATGGCTTTGTCTGCGC 445 401 974 Antisense
TTGGGATGGTTCGGACTCGTTGGCA 653 697 1064 Antisense
AATCCAGCACGTCATCATCAGGGTC 410 167 1127 Antisense
Sequence Source Affymetrix Proprietary Database