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[180734_at]

Description F41H8.1 /REP_DB=WormBase Gene ID /WP=CE19868 /TR=Q9UAQ1 /GB=AAC69211.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 4.8
(-2.9)
A 		7.5
(-2.7)
A 		2.7
(-3)
A 		112.1
(3)
P 		109
B 18.4
(-1.2)
A 		2.2
(-2.9)
A 		1.7
(-3)
A 		57.9
(3)
P 		56
C 23.7
(-0.8)
A 		3.9
(-2.8)
A 		2.1
(-3)
A 		59.8
(3)
A 		58
avr 15.6
(-1.9) 		4.5
(-2.8) 		2.2
(-3) 		76.6
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.8
(-0.7)
A 		7.1
(1.1)
A 		4.1
(-1.2)
A 		3.1
(-2)
A 		1.7
(-3)
A 		9.7
(3)
A 		8
B 3.8
(-1.2)
A 		2.2
(-2.6)
A 		2.2
(-2.6)
A 		1.8
(-3)
A 		5.5
(0.4)
A 		8.3
(3)
A 		7
C 8.3
(3)
A 		6.3
(1.3)
A 		3.7
(-0.9)
A 		2.4
(-2.1)
A 		1.3
(-3)
A 		7.3
(2.1)
A 		7
avr 5.6
(0.2) 		5.2
(-0.2) 		3.3
(-2.1) 		2.4
(-3) 		2.8
(-2.6) 		8.4
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.7
(-2.6)
A 		1.6
(-2.7)
A 		0.7
(-3)
A 		16.4
(3)
P 		16
B 5.9
(-0.2)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		12.3
(3)
P 		12
C 7.8
(1.5)
A 		1.1
(-2.7)
A 		0.7
(-3)
A 		10.1
(3)
A 		9
avr 5.1
(-0.8) 		1.1
(-2.8) 		0.6
(-3) 		12.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.9
(-1.8)
A 		2.5
(3)
A 		0.9
(-1.8)
A 		0.8
(-2.1)
A 		0.5
(-3)
A 		2.4
(2.7)
A 		2
B 1.3
(-1.2)
A 		0.7
(-2.5)
A 		0.5
(-3)
A 		0.5
(-3)
A 		2.2
(0.9)
A 		3.1
(3)
A 		3
C 3.1
(3)
A 		1.9
(0.3)
A 		1
(-1.7)
A 		0.5
(-2.8)
A 		0.4
(-3)
A 		2.4
(1.4)
A 		3
avr 1.8
(0.6) 		1.7
(0.3) 		0.8
(-2.4) 		0.6
(-3) 		1
(-1.8) 		2.6
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15554
Sequence Type Exemplar sequence
Representative Public ID F41H8.1 NCBI
Target Description F41H8.1 /REP_DB=WormBase Gene ID /WP=CE19868 /TR=Q9UAQ1 /GB=AAC69211.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070935 NCBI Caenorhabditis elegans F41H8.1 (F41H8.1) mRNA, complete cds. 11/11 None
F41H8.1 ENSEMBL cdna:known chromosome:CEL140:V:833512:835293:1 gene:F41H8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012265 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012283 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012428 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:833511-835293(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41H8.1
Entrez Gene 185638 Entrez gene
SwissProt Q9UAQ1 EMBL-EBI
WormBase CE19868 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69211 Hypothetical protein F41H8.1 [Caenorhabditis elegans] ref|NP_503336.1| F41H8.1 [Caenorhabditis elegans] 1.0E-167
blast CAE74170 Hypothetical protein CBG21843 [Caenorhabditis briggsae] 1.0E-128
blast CAI79143 Hypothetical protein C30G7.5 [Caenorhabditis elegans] ref|NP_001023690.1| C30G7.5 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503336.1 7 20-42,55-77,92-114,135-157,180-202,233-255,265-287
F41H8.1 7 20-42,55-77,92-114,135-157,180-202,233-255,265-287
Sequence
Target Sequence 
>C. ELEGANS:180734_AT
cagatatttggcagtatttttccctactcaattccggaaaacggagcaaagctgcttttc
tgaaatcgtgttagctgttgcaatattgctcggaattttcgatgcaattttatcgtttgc
gctgtccccgccaattagaatgccaaattgcggaactagtggttgctttgtcagtgatca
attccgatactactggggaatttccaatatggttctgggcttcattgtgatcctgctttc
cgtcagcttcttcttcaaaataaaggctgtaaaaaggaagacgccgaatatgggaaattc
gaagcttcagcagcacaaattccagcaggctaatagaacttcgactggaattctcgtgtc
ctctatgctatttctcacgacgccaagcgtgtgcgttgggttggttgagcttatgggtta
ctccatattcagattggtgggcccattttattcagcgagcttgatgtctagcgggatttg
caacggtattatatttatcgggtgtaatggagatgccaggcaattactcggaagaaaacc
taaacaaactctaactcacacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGATATTTGGCAGTATTTTTCCCT 689 205 363 Antisense
GTTGCAATATTGCTCGGAATTTTCG 8 439 439 Antisense
GCAATTTTATCGTTTGCGCTGTCCC 391 323 466 Antisense
GTCAGTGATCAATTCCGATACTACT 406 467 532 Antisense
ATATGGTTCTGGGCTTCATTGTGAT 616 21 569 Antisense
AAGCTTCAGCAGCACAAATTCCAGC 704 149 664 Antisense
GACGCCAAGCGTGTGCGTTGGGTTG 414 381 741 Antisense
GTTGGGTTGGTTGAGCTTATGGGTT 318 235 757 Antisense
GGGTTACTCCATATTCAGATTGGTG 202 497 777 Antisense
GATTGGTGGGCCCATTTTATTCAGC 465 435 794 Antisense
ACCTAAACAAACTCTAACTCACACG 640 35 900 Antisense
Sequence Source Affymetrix Proprietary Database