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[180733_at]

Description F52H2.3 /REP_DB=WormBase Gene ID /WP=CE10868 /TR=O17393 /GB=AAB71313.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 42      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_total > 20      4grp_total > 47      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 237.5
(3)
P 		106.1
(-2)
P 		123.8
(-1.3)
P 		79.1
(-3)
P 		158
B 260.5
(3)
P 		117.2
(-2.2)
P 		133.6
(-1.6)
P 		93.9
(-3)
P 		167
C 280.9
(3)
P 		157.9
(-1.5)
P 		118.7
(-3)
P 		168.9
(-1.1)
P 		162
avr 259.6
(3) 		127.1
(-2.5) 		125.4
(-2.5) 		114
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 107.5
(-2.8)
M 		216.2
(0.7)
P 		289
(3)
P 		186.4
(-0.3)
P 		102.9
(-2.9)
P 		100.7
(-3)
P 		188
B 176.2
(-1.1)
P 		295.9
(2.2)
P 		325.6
(3)
P 		155.1
(-1.7)
P 		164.5
(-1.4)
P 		105.6
(-3)
P 		220
C 137.8
(-2.1)
P 		292.3
(3)
P 		213.6
(0.4)
P 		187.9
(-0.4)
P 		108.8
(-3)
P 		127.2
(-2.4)
P 		184
avr 140.5
(-1.9) 		268.1
(2.7) 		276.1
(3) 		176.5
(-0.6) 		125.4
(-2.5) 		111.2
(-3) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 86.5
(3)
P 		23
(-2.1)
P 		32.4
(-1.3)
P 		11.6
(-3)
P 		75
B 83.1
(3)
P 		28.9
(-2.2)
P 		31
(-2)
P 		20
(-3)
P 		63
C 93
(3)
P 		45.4
(-1.4)
P 		41.4
(-1.8)
P 		28.5
(-3)
P 		65
avr 87.5
(3) 		32.4
(-1.9) 		34.9
(-1.7) 		20
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 19.8
(-3)
M 		76.9
(3)
P 		62.9
(1.5)
P 		47.3
(-0.1)
P 		31.1
(-1.8)
P 		24.5
(-2.5)
P 		57
B 61.3
(-0.8)
P 		98.5
(3)
P 		79.1
(1)
P 		41.1
(-2.8)
P 		66.8
(-0.2)
P 		39.4
(-3)
P 		59
C 51.1
(-1.2)
P 		89.2
(3)
P 		54.4
(-0.9)
P 		37.8
(-2.7)
P 		35.2
(-3)
P 		42.6
(-2.2)
P 		54
avr 44.1
(-2) 		88.2
(3) 		65.5
(0.4) 		42.1
(-2.2) 		44.4
(-2) 		35.5
(-3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180733_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18290
Sequence Type Exemplar sequence
Representative Public ID F52H2.3 NCBI
Target Description F52H2.3 /REP_DB=WormBase Gene ID /WP=CE10868 /TR=O17393 /GB=AAB71313.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076058 NCBI Caenorhabditis elegans F52H2.3 (F52H2.3) mRNA, complete cds. 11/11 None
SNAP00000036203 ENSEMBL cdna:SNAP chromosome:CEL140:X:2540184:2541041:-1 11/11 None
GENEFINDER00000036216 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2540184:2541041:-1 11/11 None
F52H2.3 ENSEMBL cdna:known chromosome:CEL140:X:2540184:2541041:-1 gene:F52H2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2540183-2541041(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52H2.3
Entrez Gene 186131 Entrez gene
SwissProt O17393 EMBL-EBI
WormBase CE10868 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71313 Hypothetical protein F52H2.3 [Caenorhabditis elegans] ref|NP_508459.1| F52H2.3 [Caenorhabditis elegans] 2.0E-64
blast CAE58863 Hypothetical protein CBG02092 [Caenorhabditis briggsae] 9.0E-26
Sequence
Target Sequence 
>C. ELEGANS:180733_AT
attgatcagcattgccctactacttctacataccatcgaccaactatggaagaagcagtg
gttaagatgaagcgactgcaacgatttacgagacaattttcaatttttgtccactgtgaa
gaagacaaactactatcatcttctgaaaatgctaaactccgatcagaaaaacaagacgag
aacaacgaagagcgcctgttcaaatatcccggaaacctgcgggcaataaaacgaaaaaga
aatatttcaaatgaatctatcaagaatgtcggagtcgagagtggagcaacggctaagcga
aggatgatggagcaccagaaatcaattcgtgatggtgacccggaggacattccaattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGATCAGCATTGCCCTACTACTT 555 5 22 Antisense
TACTTCTACATACCATCGACCAACT 425 643 42 Antisense
GAAGCGACTGCAACGATTTACGAGA 459 339 90 Antisense
GACAAACTACTATCATCTTCTGAAA 423 365 145 Antisense
GAAAATGCTAAACTCCGATCAGAAA 688 353 166 Antisense
GACGAGAACAACGAAGAGCGCCTGT 436 379 196 Antisense
GCGCCTGTTCAAATATCCCGGAAAC 389 287 213 Antisense
ATATCCCGGAAACCTGCGGGCAATA 574 5 225 Antisense
GGAGTCGAGAGTGGAGCAACGGCTA 168 517 292 Antisense
ATCAATTCGTGATGGTGACCCGGAG 36 25 342 Antisense
GTGACCCGGAGGACATTCCAATTGA 447 481 356 Antisense
Sequence Source Affymetrix Proprietary Database