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[180732_at]

Description C31B8.7 /REP_DB=WormBase Gene ID /WP=CE08487 /TR=O16900 /GB=AAG23977.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 10      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_total > 50      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 170.3
(-3)
P 		282.1
(3)
P 		233.7
(0.4)
P 		241.2
(0.8)
P 		112
B 147.4
(-3)
P 		243.9
(2.6)
P 		245.8
(2.7)
P 		251.2
(3)
P 		104
C 176.3
(-3)
P 		229
(0.3)
P 		233.4
(0.6)
P 		272.7
(3)
P 		96
avr 164.7
(-3) 		251.7
(2.8) 		237.6
(1.8) 		255
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 270.6
(3)
P 		237.5
(1.7)
P 		191
(-0.1)
P 		227.8
(1.3)
P 		115.9
(-3)
P 		168.8
(-0.9)
P 		155
B 186.1
(0.7)
P 		208.6
(1.6)
P 		244.7
(3)
P 		240.1
(2.8)
P 		140.5
(-1)
P 		89.2
(-3)
P 		156
C 219.1
(0.4)
P 		208.2
(0)
P 		224.4
(0.6)
A 		294.3
(3)
P 		192.7
(-0.5)
P 		119.9
(-3)
A 		174
avr 225.3
(1.7) 		218.1
(1.3) 		220
(1.4) 		254.1
(3) 		149.7
(-1.9) 		126
(-3) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 62
(3)
P 		61.2
(2.8)
P 		61.1
(2.8)
P 		35.3
(-3)
P 		27
B 47
(-3)
P 		60.2
(3)
P 		57
(1.5)
P 		53.5
(-0)
P 		13
C 58.4
(-0.9)
P 		65.9
(0.4)
P 		81.4
(3)
P 		46
(-3)
P 		35
avr 55.8
(0) 		62.4
(1.9) 		66.5
(3) 		44.9
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 49.9
(-1.2)
P 		84.5
(3)
P 		41.6
(-2.2)
P 		57.8
(-0.2)
P 		35
(-3)
P 		41.1
(-2.3)
P 		50
B 64.7
(2.2)
P 		69.4
(3)
P 		59.4
(1.3)
P 		63.6
(2)
P 		57.1
(1)
P 		33.3
(-3)
P 		36
C 81.2
(3)
P 		63.5
(0.4)
P 		57.1
(-0.5)
A 		59.2
(-0.2)
P 		62.3
(0.2)
P 		40.1
(-3)
A 		41
avr 65.3
(1.7) 		72.5
(3) 		52.7
(-0.5) 		60.2
(0.8) 		51.5
(-0.7) 		38.2
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15539
Sequence Type Exemplar sequence
Representative Public ID C31B8.7 NCBI
Target Description C31B8.7 /REP_DB=WormBase Gene ID /WP=CE08487 /TR=O16900 /GB=AAG23977.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071388(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071388 NCBI Caenorhabditis elegans C31B8.7 (C31B8.7) mRNA, complete cds. 11/11 None
SNAP00000035068 ENSEMBL cdna:SNAP chromosome:CEL140:V:2900275:2903812:-1 11/11 None
GENEFINDER00000035077 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2898373:2903137:-1 9/11 None
C31B8.7 ENSEMBL cdna:known chromosome:CEL140:V:2900275:2903137:-1 gene:C31B8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2900274-2903137(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31B8.7
Entrez Gene 183079 Entrez gene
SwissProt O16900 EMBL-EBI
WormBase CE08487 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503789 C31B8.7 [Caenorhabditis elegans] gb|AAG23977.1| Hypothetical protein C31B8.7 [Caenorhabditis elegans] 0.0
blast NP_503534 T06A1.5 [Caenorhabditis elegans] gb|AAC17770.1| Hypothetical protein T06A1.5 [Caenorhabditis elegans] 0.0
blast CAE62374 Hypothetical protein CBG06460 [Caenorhabditis briggsae] 1.0E-176
blast NP_503534 T06A1.5 [Caenorhabditis elegans] gb|AAC17770.1| Hypothetical protein T06A1.5 [Caenorhabditis elegans] 1.0E-171
blast NP_503534 T06A1.5 [Caenorhabditis elegans] gb|AAC17770.1| Hypothetical protein T06A1.5 [Caenorhabditis elegans] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 4.0E-61
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 4.8E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503789.1 1 7-24
C31B8.7 1 7-24
GENEFINDER00000035077 4 7-24,457-479,503-525,540-562
Sequence
Target Sequence 
>C. ELEGANS:180732_AT
gaactgttgcagacgtcattgcccaacagttaatggctgtagctgattgccttctgagaa
gtcgtaccttttcaaaatggtcaatttatgcggatatagacgaacgtttgattatgacag
atgatcgtataactattgacggatttttgagaactataacagacgagacgatcggctcaa
tagccttcccgcaacgttggataatgaagcgagacctacttccggcaaaattcgaaaacg
acgagcaagttattgaaacgatgcccacgcgtgcgtggcacgagacaactagcgccgcac
tgaaaggtcatcctgtgtgcaatgagcaacagagctgctgggcaaaggatattgtgcaca
atgaaaaggcgattcgaatgcttgttcacgaagtggaaactttttatcccggatttcggg
aattgtttttagacccatcaattggttacataagacactaccgcgacgtcacaatgcagt
cttgggagcacaacaacgtggcaaatctcaaaaaattcggtccattttccaacacaacgt
accctccaacaatagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGTTGCAGACGTCATTGCCCA 210 349 830 Antisense
ATGGCTGTAGCTGATTGCCTTCTGA 579 53 862 Antisense
GCCTTCTGAGAAGTCGTACCTTTTC 590 281 878 Antisense
AGACGATCGGCTCAATAGCCTTCCC 280 71 995 Antisense
AGCCTTCCCGCAACGTTGGATAATG 79 83 1011 Antisense
GAGACCTACTTCCGGCAAAATTCGA 496 393 1040 Antisense
AAACGATGCCCACGCGTGCGTGGCA 359 127 1085 Antisense
GCGTGGCACGAGACAACTAGCGCCG 172 293 1102 Antisense
ACTAGCGCCGCACTGAAAGGTCATC 150 101 1117 Antisense
ACTACCGCGACGTCACAATGCAGTC 453 101 1286 Antisense
ACACAACGTACCCTCCAACAATAGG 473 81 1361 Antisense
Sequence Source Affymetrix Proprietary Database