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[180725_at]

Description T08A9.6 /REP_DB=WormBase Gene ID /WP=CE04921 /TR=Q22333 /GB=AAA81411.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 11.5
(-1.6)
A 		6.1
(-3)
A 		7
(-2.8)
A 		28.7
(3)
A 		23
B 4.8
(-2.5)
A 		14
(1.1)
A 		18.8
(3)
A 		3.4
(-3)
A 		15
C 3
(-3)
A 		8.6
(-1)
A 		4.6
(-2.4)
A 		19.5
(3)
A 		17
avr 6.4
(-3) 		9.6
(-1.2) 		10.1
(-0.9) 		17.2
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 26.5
(0.5)
A 		5.1
(-2.7)
A 		23.6
(0.1)
A 		17
(-0.9)
A 		42.9
(3)
A 		3.4
(-3)
A 		40
B 23
(3)
A 		9.6
(-1.1)
A 		4.8
(-2.5)
A 		4.5
(-2.6)
A 		4.9
(-2.5)
A 		3.3
(-3)
A 		20
C 13
(1.7)
A 		15.8
(3)
A 		13.4
(1.8)
A 		13.9
(2.1)
A 		3.3
(-3)
A 		3.6
(-2.9)
A 		13
avr 20.8
(3) 		10.2
(-0.7) 		13.9
(0.6) 		11.8
(-0.1) 		17
(1.7) 		3.4
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.2
(3)
A 		1.3
(-3)
A 		1.8
(-2)
A 		4.2
(3)
A 		3
B 1.5
(-1.7)
A 		3.5
(1.5)
A 		4.4
(3)
A 		0.7
(-3)
A 		4
C 1
(-3)
A 		2.5
(0.9)
A 		1.6
(-1.4)
A 		3.3
(3)
A 		2
avr 2.2
(-3) 		2.4
(-0.6) 		2.6
(1.8) 		2.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.9
(-1)
A 		1.8
(-2.5)
A 		5.1
(-0.9)
A 		4.3
(-1.3)
A 		12.9
(3)
A 		0.8
(-3)
A 		12
B 8
(3)
A 		3.2
(-1.2)
A 		1.2
(-3)
A 		1.2
(-3)
A 		2
(-2.3)
A 		1.2
(-3)
A 		7
C 4.8
(3)
A 		4.8
(3)
A 		3.4
(0.7)
A 		2.8
(-0.2)
A 		1.1
(-3)
A 		1.2
(-2.8)
A 		4
avr 5.9
(3) 		3.3
(-0.3) 		3.2
(-0.4) 		2.8
(-0.9) 		5.3
(2.3) 		1.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180725_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15994
Sequence Type Exemplar sequence
Representative Public ID T08A9.6 NCBI
Target Description T08A9.6 /REP_DB=WormBase Gene ID /WP=CE04921 /TR=Q22333 /GB=AAA81411.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076831(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076831 NCBI Caenorhabditis elegans T08A9.6 (T08A9.6) mRNA, complete cds. 11/11 None
SNAP00000001749 ENSEMBL cdna:SNAP chromosome:CEL140:X:7312120:7313310:1 11/11 None
GENEFINDER00000001764 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7312120:7313310:1 11/11 None
T08A9.6 ENSEMBL cdna:known chromosome:CEL140:X:7312120:7312510:1 gene:T08A9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7312118-7312509(+) 100.0 100.0
chrV:16039037-16039437(+) 90.72 90.72
Public Domain and Genome References
Gene Title
Ensembl T08A9.6
Entrez Gene 188265 Entrez gene
SwissProt Q22333 EMBL-EBI
WormBase CE04921 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07666 Hypothetical protein T10C6.10 [Caenorhabditis elegans] ref|NP_507030.1| T10C6.10 [Caenorhabditis elegans] 1.0E-83
blast NP_509233 T08A9.5 [Caenorhabditis elegans] gb|AAA81412.1| Hypothetical protein T08A9.5 [Caenorhabditis elegans] 6.0E-76
blast NP_509232 T08A9.6 [Caenorhabditis elegans] gb|AAA81411.1| Hypothetical protein T08A9.6 [Caenorhabditis elegans] 2.0E-59
blast CAB07666 Hypothetical protein T10C6.10 [Caenorhabditis elegans] ref|NP_507030.1| T10C6.10 [Caenorhabditis elegans] 2.0E-49
blast NP_509232 T08A9.6 [Caenorhabditis elegans] gb|AAA81411.1| Hypothetical protein T08A9.6 [Caenorhabditis elegans] 2.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.3E-4
Sequence
Target Sequence 
>C. ELEGANS:180725_AT
taatctattcactttgtaaatcaaagaatcgacgaccgcctcctgaactgataccgtttc
tgaagctatcttccaaggcattgagaattgttcttcaagaattagacgctgttcacacat
tcgagttgtcccaagtgtcggcggaactgtccgctttgatcaaccccgctcatcacacat
ttgaccatattgaggtcaacatttcaaaagagaaaaaatcaatatctttctgcaataatg
ggcaaaagaatcgaccgctcactttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCTATTCACTTTGTAAATCAAA 575 635 20 Antisense
CCTCCTGAACTGATACCGTTTCTGA 377 261 58 Antisense
GATACCGTTTCTGAAGCTATCTTCC 699 421 69 Antisense
GAAGCTATCTTCCAAGGCATTGAGA 644 341 81 Antisense
AAGAATTAGACGCTGTTCACACATT 530 151 116 Antisense
GCTGTTCACACATTCGAGTTGTCCC 17 297 127 Antisense
AAGTGTCGGCGGAACTGTCCGCTTT 442 159 152 Antisense
GCGGAACTGTCCGCTTTGATCAACC 647 293 160 Antisense
AATATCTTTCTGCAATAATGGGCAA 220 173 240 Antisense
TGGGCAAAAGAATCGACCGCTCACT 528 553 258 Antisense
AAAAGAATCGACCGCTCACTTTCAA 113 133 263 Antisense
Sequence Source Affymetrix Proprietary Database