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[180724_at]

Description C03C11.1 /REP_DB=WormBase Gene ID /WP=CE07873 /TR=Q9XVT6 /GB=CAB02724.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 39.2
(-2.2)
A 		90.9
(3)
A 		31.5
(-3)
A 		50.9
(-1)
A 		59
B 58.1
(3)
A 		47.9
(-2.6)
A 		48.1
(-2.5)
A 		47.1
(-3)
A 		11
C 24.4
(-3)
A 		90.7
(3)
A 		43.8
(-1.2)
A 		88.8
(2.8)
A 		66
avr 40.6
(-3) 		76.5
(3) 		41.1
(-2.9) 		62.3
(0.6) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 3.8
(-3)
A 		50.9
(-1.3)
A 		18.7
(-2.5)
A 		28.5
(-2.1)
A 		74.4
(-0.5)
P 		173.7
(3)
P 		170
B 41.7
(-1.2)
M 		48.5
(-0.8)
A 		3
(-3)
A 		32.5
(-1.6)
A 		117.9
(2.4)
P 		129.6
(3)
P 		127
C 54.4
(-2.5)
A 		54.6
(-2.5)
P 		47.8
(-3)
A 		49.1
(-2.9)
A 		120
(2.4)
P 		127.5
(3)
P 		80
avr 33.3
(-2.5) 		51.3
(-1.6) 		23.2
(-3) 		36.7
(-2.3) 		104.1
(1) 		143.6
(3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 14.3
(0.4)
A 		19.7
(3)
A 		8.2
(-2.6)
A 		7.4
(-3)
A 		12
B 18.5
(3)
A 		11.8
(-1.7)
A 		11.1
(-2.2)
A 		10
(-3)
A 		9
C 8.1
(-3)
A 		26.1
(3)
A 		15.3
(-0.6)
A 		15
(-0.7)
A 		18
avr 13.6
(-1) 		19.2
(3) 		11.5
(-2.5) 		10.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 0.7
(-3)
A 		18.1
(-0.5)
A 		4.1
(-2.5)
A 		7.2
(-2.1)
A 		22.4
(0.1)
P 		42.3
(3)
P 		42
B 14.5
(-1.3)
M 		16.2
(-1)
A 		0.7
(-3)
A 		8.6
(-2)
A 		47.9
(2.9)
P 		48.3
(3)
P 		48
C 20.2
(-1.1)
A 		16.7
(-1.8)
P 		12.2
(-2.6)
A 		9.9
(-3)
A 		38.8
(2.3)
P 		42.7
(3)
P 		33
avr 11.8
(-2.1) 		17
(-1.2) 		5.7
(-3) 		8.6
(-2.6) 		36.4
(1.8) 		44.4
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180724_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2014
Sequence Type Exemplar sequence
Representative Public ID C03C11.1 NCBI
Target Description C03C11.1 /REP_DB=WormBase Gene ID /WP=CE07873 /TR=Q9XVT6 /GB=CAB02724.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060244(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060244 NCBI Caenorhabditis elegans C03C11.1 (C03C11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000030081 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10018854:10023558:1 11/11 None
SNAP00000030078 ENSEMBL cdna:SNAP chromosome:CEL140:I:10022861:10023558:1 11/11 None
C03C11.1 ENSEMBL cdna:known chromosome:CEL140:I:10022857:10023558:1 gene:C03C11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10022791-10023489(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03C11.1
Entrez Gene 172862 Entrez gene
SwissProt Q9XVT6 EMBL-EBI
WormBase CE07873 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02724 Hypothetical protein C03C11.1 [Caenorhabditis elegans] ref|NP_492645.1| C03C11.1 [Caenorhabditis elegans] 4.0E-51
blast CAB02724 Hypothetical protein C03C11.1 [Caenorhabditis elegans] ref|NP_492645.1| C03C11.1 [Caenorhabditis elegans] 7.0E-51
blast CAE60215 Hypothetical protein CBG03783 [Caenorhabditis briggsae] 9.0E-40
blast CAE60215 Hypothetical protein CBG03783 [Caenorhabditis briggsae] 2.0E-39
blast CAE68963 Hypothetical protein CBG14943 [Caenorhabditis briggsae] 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 4.1E-12
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.2E-38
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 4.1E-12
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.2E-38
Sequence
Target Sequence 
>C. ELEGANS:180724_AT
atggcagaaaactttgacacacttctacaacttgctcatcttggttacagtacgcttgca
cccattgctcttgctggatacgtcattgcacaatgtggaggaaagaagaaggctggtgga
tcatcgaatggtggaggtggagctaagactggaggtggtggtgcaactggtgatgatgga
aaaagtgataagaaagacaagtcatccaatgatccaaaaccagagggaggtccaaaggct
ccaagtgataagaatgctgtcgcaggaacacacgatccaaattatcaaactcttgctgga
gtcgatggaaatgtattccaagagaaaggaaaagctcctgctgctgctggtggtgcttcc
cctacggctggtgctccaaagcctggaggtcctggaatggctgccacccatgatcccaat
taccaaacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCAGAAAACTTTGACACACTTC 325 51 13 Antisense
ACTTCTACAACTTGCTCATCTTGGT 405 103 33 Antisense
TGCTCATCTTGGTTACAGTACGCTT 329 581 45 Antisense
TCTTGGTTACAGTACGCTTGCACCC 423 617 51 Antisense
ATTGCTCTTGCTGGATACGTCATTG 247 7 76 Antisense
AAGAAGGCTGGTGGATCATCGAATG 401 151 118 Antisense
GGAGGTGGAGCTAAGACTGGAGGTG 359 517 145 Antisense
GGAGGTGGTGGTGCAACTGGTGATG 450 515 163 Antisense
AGTCATCCAATGATCCAAAACCAGA 333 61 212 Antisense
AGAGGGAGGTCCAAAGGCTCCAAGT 593 67 234 Antisense
CCCATGATCCCAATTACCAAACACT 84 259 419 Antisense
Sequence Source Affymetrix Proprietary Database