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[180722_at]

Description F40F9.11 /REP_DB=WormBase Gene ID /WP=CE16019 /TR=O17867 /GB=CAA94769.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 30.2
(-3)
A 		48.2
(-1.1)
A 		46.3
(-1.3)
A 		86.1
(3)
P 		56
B 22.3
(-3)
A 		48.9
(1.3)
A 		59.6
(3)
P 		42.4
(0.2)
A 		37
C 5.7
(-3)
A 		53.5
(0.1)
P 		18.4
(-2.2)
A 		97.1
(3)
P 		91
avr 19.4
(-3) 		50.2
(0.3) 		41.4
(-0.6) 		75.2
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 7.3
(-2.6)
A 		34
(-0.5)
P 		2.7
(-3)
A 		27.8
(-1)
A 		26
(-1.2)
A 		78.6
(3)
A 		76
B 33.7
(0.8)
A 		52.5
(3)
A 		1.9
(-3)
A 		42.6
(1.8)
A 		10.2
(-2)
A 		26.3
(-0.1)
A 		51
C 32.2
(0.5)
A 		24.9
(-0.7)
A 		16.1
(-2.2)
A 		11.2
(-3)
A 		28.5
(-0.1)
P 		47.5
(3)
P 		36
avr 24.4
(-0.6) 		37.1
(1.1) 		6.9
(-3) 		27.2
(-0.2) 		21.6
(-1) 		50.8
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11
(-1.6)
A 		10.5
(-3)
A 		12.1
(1.6)
A 		12.6
(3)
P 		2
B 7.1
(-3)
A 		12.1
(1.5)
A 		13.8
(3)
P 		9
(-1.3)
A 		7
C 1.9
(-3)
A 		15.4
(2.6)
P 		6.4
(-1.1)
A 		16.4
(3)
P 		15
avr 6.7
(-3) 		12.7
(3) 		10.8
(1.1) 		12.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.3
(-2.8)
A 		12.1
(0.7)
P 		0.6
(-3)
A 		7.1
(-0.9)
A 		7.8
(-0.7)
A 		19.1
(3)
A 		19
B 11.7
(1)
A 		17.5
(3)
A 		0.5
(-3)
A 		11.3
(0.8)
A 		4.2
(-1.7)
A 		9.8
(0.3)
A 		17
C 11.9
(1.2)
A 		7.6
(-0.6)
A 		4.1
(-2.2)
A 		2.2
(-3)
A 		9.2
(0.1)
P 		15.9
(3)
P 		14
avr 8.3
(0) 		12.4
(1.9) 		1.7
(-3) 		6.9
(-0.6) 		7.1
(-0.5) 		14.9
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11474
Sequence Type Exemplar sequence
Representative Public ID F40F9.11 NCBI
Target Description F40F9.11 /REP_DB=WormBase Gene ID /WP=CE16019 /TR=O17867 /GB=CAA94769.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000009254 ENSEMBL cdna:SNAP chromosome:CEL140:V:9721534:9722306:1 10/11 None
F40F9.11 ENSEMBL cdna:pseudogene chromosome:CEL140:V:9721044:9722306:1 gene:F40F9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9721043-9722306(+) 100.0 100.0
Public Domain and Genome References
Ensembl F40F9.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T22048 hypothetical protein F40F9.11 - Caenorhabditis elegans 1.0E-106
blast AAK18893 Seven tm receptor protein 190 [Caenorhabditis elegans] ref|NP_504923.1| Seven TM Receptor family member (str-190) [Caenorhabditis elegans] 5.0E-62
blast CAE72239 Hypothetical protein CBG19356 [Caenorhabditis briggsae] 5.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000009254 3 57-79,100-122,137-158
Sequence
Target Sequence 
>C. ELEGANS:180722_AT
tattcttgtttcccctgatgtatggtatctggtggtggaaaaatcccgatatggatgaat
atatgagagacttgatcatgagaacagttgggcaaccatttgaaagaattacttattttg
gtgcaaaattttataattacgacgaggaaggaagaatgtcattgaacaaaaatgcttgga
ttggactttgtcaaacttcatttatggtgagcagctctttggcatgtgtgttcggtttcg
gaacattgtgctatcggcgtctttcggatacgttatcaattgtttcaaatgccccaaata
atcttcaaaagcaactgttctatgcattatgcttccaaactcttatccctttagttctaa
tgcactttcccatcaccattttcttcctcggtccaatgcttactcttgatactgatttta
ccacaacgattgcattccatacaattataatttatccagctgttgatccacttccaaact
ttgttatcatcaaaaactatcgcgaagctgtgttgaatatgttccgttggatgttctgcg
gaagacaagcaaattctcaaaacccgcacggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCTTGTTTCCCCTGATGTATGG 118 663 239 Antisense
GTGAGCAGCTCTTTGGCATGTGTGT 605 483 445 Antisense
TTTGGCATGTGTGTTCGGTTTCGGA 554 663 456 Antisense
CGGAACATTGTGCTATCGGCGTCTT 289 241 477 Antisense
ATCGGCGTCTTTCGGATACGTTATC 559 33 491 Antisense
TCAAATGCCCCAAATAATCTTCAAA 387 629 523 Antisense
GCATTATGCTTCCAAACTCTTATCC 58 309 562 Antisense
ACTCTTATCCCTTTAGTTCTAATGC 211 101 577 Antisense
GGTCCAATGCTTACTCTTGATACTG 234 501 628 Antisense
TTACCACAACGATTGCATTCCATAC 456 681 656 Antisense
AGCAAATTCTCAAAACCCGCACGGT 377 73 786 Antisense
Sequence Source Affymetrix Proprietary Database