[Home] | [Total List]

[180721_at]

Description C45G7.2 /REP_DB=WormBase Gene ID /WP=CE17549 /TR=O76358 /GB=AAC19181.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      6grp_highest_nonorm > 79      6grp_total > 84      4grp_total > 62      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 83.3
(3)
P 		64.3
(1.6)
A 		53.5
(0.8)
A 		2.5
(-3)
A 		81
B 71.6
(1.9)
P 		32.6
(-3)
M 		80.1
(3)
A 		45.5
(-1.4)
A 		48
C 73.6
(3)
P 		46.5
(-3)
A 		53.6
(-1.4)
A 		50.4
(-2.1)
A 		27
avr 76.2
(3) 		47.8
(-0.9) 		62.4
(1.1) 		32.8
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2288
1 2 3 4 5 6 range
A 559
(-3)
P 		1531.9
(0.2)
P 		1305.8
(-0.6)
P 		2400
(3)
P 		2058.9
(1.9)
P 		2319.2
(2.7)
P 		1841
B 536.4
(-3)
P 		1409
(-0.7)
P 		1221.3
(-1.2)
P 		2026.2
(0.9)
P 		2824.8
(3)
P 		1883.2
(0.5)
P 		2288
C 719.6
(-3)
P 		1469
(-0.5)
P 		1163
(-1.5)
P 		1981.2
(1.2)
P 		2281.8
(2.2)
P 		2527.9
(3)
P 		1808
avr 605
(-3) 		1470
(-0.1) 		1230
(-0.9) 		2135.8
(2.1) 		2388.5
(3) 		2243.4
(2.5) 		1784
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 30.3
(3)
P 		14
(-0.3)
A 		14
(-0.3)
A 		0.4
(-3)
A 		30
B 22.8
(3)
P 		8
(-3)
M 		18.6
(1.3)
A 		9.7
(-2.3)
A 		15
C 24.4
(3)
P 		13.4
(-1.2)
A 		18.7
(0.8)
A 		8.5
(-3)
A 		16
avr 25.8
(3) 		11.8
(-1.3) 		17.1
(0.3) 		6.2
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1045
1 2 3 4 5 6 range
A 103
(-3)
P 		544.8
(2.1)
P 		284.4
(-0.9)
P 		608.7
(2.9)
P 		621.3
(3)
P 		564.7
(2.3)
P 		518
B 186.6
(-3)
P 		469
(-1.2)
P 		296.6
(-2.3)
P 		536.7
(-0.8)
P 		1147.7
(3)
P 		702.2
(0.2)
P 		961
C 266.7
(-3)
P 		448.2
(-1.1)
P 		296
(-2.7)
P 		398.4
(-1.6)
P 		738.4
(1.9)
P 		846.2
(3)
P 		580
avr 185.4
(-3) 		487.3
(-0.2) 		292.3
(-2) 		514.6
(0) 		835.8
(3) 		704.4
(1.8) 		650
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180721_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10562
Sequence Type Exemplar sequence
Representative Public ID C45G7.2 NCBI
Target Description C45G7.2 /REP_DB=WormBase Gene ID /WP=CE17549 /TR=O76358 /GB=AAC19181.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067806 NCBI Caenorhabditis elegans C45G7.2 (C45G7.2) mRNA, complete cds. 11/11 None
SNAP00000040034 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2464483:2468808:1 9/11 None
GENEFINDER00000040037 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2467679:2471433:1 11/11 None
C45G7.2 ENSEMBL cdna:known chromosome:CEL140:IV:2467679:2468808:1 gene:C45G7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2467684-2468814(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45G7.2
Entrez Gene 183475 Entrez gene
SwissProt O76358 EMBL-EBI
WormBase CE17549 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500207 C45G7.2 [Caenorhabditis elegans] gb|AAC19181.1| Hypothetical protein C45G7.2 [Caenorhabditis elegans] 3.0E-85
blast NP_500208 C45G7.1 [Caenorhabditis elegans] gb|AAC19180.1| Hypothetical protein C45G7.1 [Caenorhabditis elegans] 2.0E-83
blast NP_500207 C45G7.2 [Caenorhabditis elegans] gb|AAC19181.1| Hypothetical protein C45G7.2 [Caenorhabditis elegans] 7.0E-83
blast NP_500206 C45G7.3 [Caenorhabditis elegans] gb|AAC19179.1| Hypothetical protein C45G7.3 [Caenorhabditis elegans] 4.0E-79
blast NP_500207 C45G7.2 [Caenorhabditis elegans] gb|AAC19181.1| Hypothetical protein C45G7.2 [Caenorhabditis elegans] 1.0E-78
blast NP_500206 C45G7.3 [Caenorhabditis elegans] gb|AAC19179.1| Hypothetical protein C45G7.3 [Caenorhabditis elegans] 2.0E-72
blast CAE65750 Hypothetical protein CBG10836 [Caenorhabditis briggsae] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR008597 EMBL-EBI Destabilase 8.6E-79
Pfam IPR008597 EMBL-EBI Destabilase 2.6E-72
Pfam IPR008597 EMBL-EBI Destabilase 8.6E-79
Pfam IPR008597 EMBL-EBI Destabilase 5.7E-38
Pfam IPR008597 EMBL-EBI Destabilase 9.4E-24
Sequence
Target Sequence 
>C. ELEGANS:180721_AT
gtttgtcaaggctattctacttctttctattgcggtcgcctacgcctccgccgattgtct
ccattgcatctgcatgagagagtccggatgtaagccgatcggatgtcacatggatgttgg
atcgctttcttgtggatattatcagattaaaatcccatactacgaagactgcggtcaacc
tggcaagaagcacggagaatcaactgaagttgcctggaagagatgtgctgacgatcttaa
gtgtgctactaattgtgttgagaactactacaaccgctacaagcatgaatgtgccggaac
tggacagggagcttgcgaggtgatggcccgtaaccataatggaggaccacgtggatgcca
cgcgtcaggaaccttgggatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGTCAAGGCTATTCTACTTCTT 505 451 15 Antisense
TATTCTACTTCTTTCTATTGCGGTC 652 663 27 Antisense
GATTGTCTCCATTGCATCTGCATGA 488 433 67 Antisense
TAAGCCGATCGGATGTCACATGGAT 412 637 105 Antisense
GATGTTGGATCGCTTTCTTGTGGAT 706 409 127 Antisense
AAATCCCATACTACGAAGACTGCGG 181 117 164 Antisense
AAGACTGCGGTCAACCTGGCAAGAA 478 153 179 Antisense
GTGCTGACGATCTTAAGTGTGCTAC 267 479 239 Antisense
ACCGCTACAAGCATGAATGTGCCGG 658 89 287 Antisense
TTGCGAGGTGATGGCCCGTAACCAT 390 701 327 Antisense
CCACGCGTCAGGAACCTTGGGATAC 24 273 372 Antisense
Sequence Source Affymetrix Proprietary Database