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[180720_at]

Description K04A8.2 /REP_DB=WormBase Gene ID /WP=CE11702 /TR=Q94258 /GB=AAC48048.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.2
(3)
A 		3
(-3)
A 		3.4
(-2.8)
A 		8
(-0.7)
A 		13
B 4.8
(-2.9)
A 		7.6
(-1.7)
A 		18.5
(3)
A 		4.6
(-3)
A 		14
C 2.6
(-3)
A 		3.1
(-2.5)
A 		3.2
(-2.4)
A 		8.4
(3)
A 		6
avr 7.9
(2.2) 		4.6
(-3) 		8.4
(3) 		7
(0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 7
(1.3)
A 		5.4
(-0)
A 		3
(-2)
A 		3.8
(-1.4)
A 		9.1
(3)
A 		1.8
(-3)
A 		7
B 6.5
(-2)
A 		29.7
(3)
A 		2
(-3)
A 		5.9
(-2.2)
A 		2
(-3)
A 		6.2
(-2.1)
A 		28
C 5.1
(1)
A 		4.4
(0.1)
A 		6.6
(3)
A 		2.3
(-2.6)
A 		2
(-3)
A 		4.1
(-0.3)
A 		5
avr 6.2
(-1.5) 		13.2
(3) 		3.9
(-3) 		4
(-2.9) 		4.4
(-2.7) 		4
(-2.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 5.9
(3)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		1.2
(-2.4)
A 		5
B 1.5
(-2.1)
A 		1.9
(-1.4)
A 		4.3
(3)
A 		1
(-3)
A 		3
C 0.8
(-3)
A 		0.9
(-2)
A 		1.1
(0)
A 		1.4
(3)
A 		1
avr 2.7
(3) 		1.2
(-3) 		2.1
(0.6) 		1.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.3
(-0.7)
A 		1.9
(0.9)
A 		0.7
(-2.2)
A 		1
(-1.4)
A 		2.7
(3)
A 		0.4
(-3)
A 		2
B 2.3
(-1.9)
A 		9.9
(3)
A 		0.5
(-3)
A 		1.6
(-2.3)
A 		0.8
(-2.8)
A 		2.3
(-1.9)
A 		9
C 1.9
(3)
A 		1.3
(0.4)
A 		1.7
(2.1)
A 		0.5
(-3)
A 		0.7
(-2.1)
A 		1.4
(0.9)
A 		1
avr 1.8
(-1.6) 		4.4
(3) 		1
(-3) 		1
(-3) 		1.4
(-2.3) 		1.4
(-2.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180720_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11789
Sequence Type Exemplar sequence
Representative Public ID K04A8.2 NCBI
Target Description K04A8.2 /REP_DB=WormBase Gene ID /WP=CE11702 /TR=Q94258 /GB=AAC48048.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072267(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072267 NCBI Caenorhabditis elegans K04A8.2 (K04A8.2) mRNA, complete cds. 11/11 None
SNAP00000001688 ENSEMBL cdna:SNAP chromosome:CEL140:V:6565340:6566775:1 11/11 None
GENEFINDER00000001692 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6564642:6567740:1 10/11 None
K04A8.2 ENSEMBL cdna:known chromosome:CEL140:V:6564642:6566775:1 gene:K04A8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6564641-6566775(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04A8.2
Entrez Gene 186970 Entrez gene
SwissProt Q94258 EMBL-EBI
WormBase CE11702 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48048 Hypothetical protein K04A8.2 [Caenorhabditis elegans] ref|NP_504668.1| K04A8.2 [Caenorhabditis elegans] 1.0E-167
blast AAC48048 Hypothetical protein K04A8.2 [Caenorhabditis elegans] ref|NP_504668.1| K04A8.2 [Caenorhabditis elegans] 1.0E-108
blast CAE71909 Hypothetical protein CBG18971 [Caenorhabditis briggsae] 1.0E-107
blast CAE71909 Hypothetical protein CBG18971 [Caenorhabditis briggsae] 1.0E-101
blast CAE71910 Hypothetical protein CBG18972 [Caenorhabditis briggsae] 4.0E-97
blast AAC48047 Hypothetical protein K04A8.1 [Caenorhabditis elegans] ref|NP_504669.1| K04A8.1 [Caenorhabditis elegans] 2.0E-90
blast CAB07296 Hypothetical protein W08G11.1 [Caenorhabditis elegans] ref|NP_507132.1| W08G11.1 [Caenorhabditis elegans] pir||T26291 hypothetical protein W08G11.1 - Caenorhabditis elegans 4.0E-88
blast CAE71909 Hypothetical protein CBG18971 [Caenorhabditis briggsae] 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 2.4E-124
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 4.9E-91
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504668.1 1 21-43
K04A8.2 1 21-43
GENEFINDER00000001692 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:180720_AT
gttggccgatgtggcgtatcacacagaagctttgtctgtgttttatgcaatggatactca
tcgattggatggaatgagtggtgttgtcattggaagagcgttgagaatattgacagtgga
atacaatacattggaaattcaagaaacgttcaaaaatcgactctcgtcaattctccctac
ggattttgttacgaattggcaaaactataccgaatcatttgattttgctgcttcattttc
atcaatcgaacattttggattgggacgctatggtgatccaattgatcctatcggggattt
gagagaaatgttaaaaattaaatgtattcttaaaaaaggaggattactgtttctcggtgt
tccaattggaaccgatgcgatctcatataatgttcatagaatctacggtcccgttcgatt
agcactgatgatgtatggtttcgaatggattggcacattttctggggatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGCCGATGTGGCGTATCACACA 634 435 375 Antisense
GAAGCTTTGTCTGTGTTTTATGCAA 52 343 400 Antisense
TCAAAAATCGACTCTCGTCAATTCT 423 629 524 Antisense
GTCAATTCTCCCTACGGATTTTGTT 30 463 540 Antisense
GAATCATTTGATTTTGCTGCTTCAT 13 329 586 Antisense
CGAACATTTTGGATTGGGACGCTAT 211 249 621 Antisense
GGTGATCCAATTGATCCTATCGGGG 563 499 646 Antisense
GGATTACTGTTTCTCGGTGTTCCAA 208 507 715 Antisense
ATTGGAACCGATGCGATCTCATATA 359 3 739 Antisense
GAATCTACGGTCCCGTTCGATTAGC 265 323 773 Antisense
GGATTGGCACATTTTCTGGGGATCA 211 509 821 Antisense
Sequence Source Affymetrix Proprietary Database