[Home] | [Total List]

[180719_at]

Description Y37A1B.9 /REP_DB=WormBase Gene ID /WP=CE19079 /TR=Q9XXF7 /GB=CAA19492.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 6.9
(-2.7)
A 		18.6
(3)
A 		6.2
(-3)
A 		17.5
(2.5)
A 		12
B 17.7
(-3)
A 		25.9
(-2.1)
A 		43.1
(-0.2)
A 		72.9
(3)
A 		55
C 36.9
(-1.9)
A 		22.6
(-2.9)
A 		21.4
(-3)
A 		104.1
(3)
P 		83
avr 20.5
(-3) 		22.4
(-2.7) 		23.6
(-2.6) 		64.8
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 59.3
(3)
A 		6.5
(-3)
A 		39.5
(0.8)
A 		10
(-2.6)
A 		29.7
(-0.4)
A 		44.9
(1.4)
A 		53
B 7.6
(-2.6)
A 		10.7
(-1.4)
A 		6.6
(-3)
A 		21.5
(2.9)
A 		18.2
(1.6)
A 		21.8
(3)
A 		15
C 24.4
(-0.9)
A 		27.8
(-0.5)
A 		57
(3)
A 		30.6
(-0.1)
A 		40.8
(1.1)
A 		6.5
(-3)
A 		51
avr 30.4
(1.8) 		15
(-3) 		34.4
(3) 		20.7
(-1.2) 		29.6
(1.5) 		24.4
(-0.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.5
(-0.8)
A 		4
(3)
A 		1.6
(-3)
A 		2.6
(-0.5)
A 		2
B 5.6
(-3)
A 		6.4
(-2.5)
A 		10
(-0.3)
A 		15.5
(3)
A 		10
C 12.2
(0.1)
A 		6.5
(-3)
A 		7.5
(-2.5)
A 		17.5
(3)
P 		11
avr 6.8
(-1.9) 		5.6
(-3) 		6.4
(-2.2) 		11.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.9
(3)
A 		2.3
(-3)
A 		8.6
(1.4)
A 		2.5
(-2.9)
A 		9
(1.7)
A 		10.9
(3)
A 		9
B 2.7
(-2)
A 		3.6
(-1.2)
A 		1.6
(-3)
A 		5.7
(0.8)
A 		7.4
(2.4)
A 		8.1
(3)
A 		7
C 9.1
(0.4)
A 		8.5
(0.1)
A 		14.5
(3)
A 		6.2
(-1)
A 		13.2
(2.4)
A 		2.2
(-3)
A 		12
avr 7.6
(0.3) 		4.8
(-3) 		8.2
(1) 		4.8
(-3) 		9.9
(3) 		7.1
(-0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180719_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10264
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.9 NCBI
Target Description Y37A1B.9 /REP_DB=WormBase Gene ID /WP=CE19079 /TR=Q9XXF7 /GB=CAA19492.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070286 NCBI Caenorhabditis elegans Y37A1B.9 (Y37A1B.9) mRNA, complete cds. 11/11 None
Y37A1B.9 ENSEMBL cdna:known chromosome:CEL140:IV:14016068:14019502:-1 gene:Y37A1B.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004222 3/11 Cross Hyb Matching Probes None
GENEFINDER00000004232 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14016073-14019508(-) 97.64 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37A1B.9
Entrez Gene 189603 Entrez gene
SwissProt Q9XXF7 EMBL-EBI
WormBase CE19079 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19492 Hypothetical protein Y37A1B.9 [Caenorhabditis elegans] ref|NP_502687.1| Y37A1B.9 [Caenorhabditis elegans] 0.0
blast CAB63231 Hypothetical protein H25K10.5 [Caenorhabditis elegans] ref|NP_502924.1| H25K10.5 [Caenorhabditis elegans] 2.0E-86
blast AAF39996 Hypothetical protein ZK355.4 [Caenorhabditis elegans] ref|NP_494402.1| ZK355.4 [Caenorhabditis elegans] 4.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.4E-8
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-12
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.5E-5
Sequence
Target Sequence 
>C. ELEGANS:180719_AT
cagatttctgtctatcatttctcgaactcatattcttctcaaaaataggagtagaattcc
ggaatattcaggcaacatactgtcaagatttcaatgagacacttgatgccaattatggat
tttgccagtttcaaactctgagcaatttgggttatggatgtgaaataatattcggtgatt
tggttattgattccaatgagggaaaatatttggaaaaactaattcatattccatttttgt
ttggaacattgaagattcaatatatgaaatcggaagccactcagccagccattacgatac
gttcgaataagtacttgaaacgagcaagaataccaatgcttgagcacgtaatttcaaaga
ctagcgatgatgtggtaatgtacgaaaatccgtcgatgtatagcaataatcaagaatgcc
tactgtaccgtataacctatcaaaccaacttgaacattaggaatctagattgtggttggg
agcctcctattttgttagaaatgttggtttactttccagatacaaatgtcttcaatgaat
cagacaacattaagcataatggcatcattttcatgttttggttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGATTTCTGTCTATCATTTCTCGA 194 207 836 Antisense
TTTCTCGAACTCATATTCTTCTCAA 441 671 853 Antisense
TTTGCCAGTTTCAAACTCTGAGCAA 205 669 956 Antisense
TATGAAATCGGAAGCCACTCAGCCA 63 657 1098 Antisense
CACTCAGCCAGCCATTACGATACGT 651 197 1113 Antisense
GAATGCCTACTGTACCGTATAACCT 119 331 1249 Antisense
CCGTATAACCTATCAAACCAACTTG 157 1 1263 Antisense
TCTAGATTGTGGTTGGGAGCCTCCT 279 613 1299 Antisense
TTGGGAGCCTCCTATTTTGTTAGAA 496 707 1311 Antisense
TGTTGGTTTACTTTCCAGATACAAA 535 563 1337 Antisense
GGCATCATTTTCATGTTTTGGTTAG 288 535 1396 Antisense
Sequence Source Affymetrix Proprietary Database