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[180718_s_at]

Description K09B11.4 /REP_DB=WormBase Gene ID /WP=CE19991 /TR=Q9XU79 /GB=CAB05551.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 114.4
(3)
A 		83.4
(0.2)
A 		46.9
(-3)
A 		67.7
(-1.2)
A 		68
B 53.5
(-3)
A 		81.9
(2.2)
A 		80.8
(2)
A 		86.2
(3)
A 		33
C 126.3
(-1.6)
A 		118
(-1.9)
A 		83.3
(-3)
A 		265.7
(3)
A 		182
avr 98.1
(-0.6) 		94.4
(-0.9) 		70.3
(-3) 		139.9
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 101.9
(0.9)
A 		151.8
(3)
A 		117.3
(1.5)
A 		49.1
(-1.3)
A 		106.4
(1.1)
A 		10
(-3)
A 		142
B 142.2
(2.1)
A 		148.6
(2.5)
A 		85.5
(-1.8)
A 		155.4
(3)
A 		103.6
(-0.5)
A 		67.5
(-3)
A 		88
C 133.8
(2)
A 		107.9
(0.7)
A 		32.3
(-3)
A 		155.3
(3)
A 		44
(-2.4)
A 		123.2
(1.4)
A 		123
avr 126
(2.1) 		136.1
(3) 		78.4
(-2) 		119.9
(1.6) 		84.7
(-1.5) 		66.9
(-3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 41.7
(3)
A 		18.1
(-1.5)
A 		12.3
(-2.5)
A 		9.9
(-3)
A 		32
B 17
(-3)
A 		20.2
(3)
A 		18.7
(0.2)
A 		18.4
(-0.4)
A 		3
C 41.8
(1.9)
A 		33.9
(-1.1)
A 		29
(-3)
A 		44.8
(3)
A 		16
avr 33.5
(3) 		24.1
(-1.2) 		20
(-3) 		24.4
(-1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 18.8
(-1.1)
A 		54
(3)
A 		25.5
(-0.3)
A 		12.4
(-1.8)
A 		32.1
(0.5)
A 		2.4
(-3)
A 		52
B 49.5
(3)
A 		49.5
(3)
A 		20.8
(-3)
A 		41.2
(1.3)
A 		42.1
(1.5)
A 		25.2
(-2.1)
A 		29
C 49.6
(3)
A 		32.9
(0.6)
A 		8.2
(-3)
A 		31.2
(0.3)
A 		14.2
(-2.1)
A 		41.2
(1.8)
A 		41
avr 39.3
(1.6) 		45.5
(3) 		18.2
(-3) 		28.3
(-0.8) 		29.5
(-0.5) 		22.9
(-2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180718_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8931
Sequence Type Exemplar sequence
Representative Public ID K09B11.4 NCBI
Target Description K09B11.4 /REP_DB=WormBase Gene ID /WP=CE19991 /TR=Q9XU79 /GB=CAB05551.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070188(11), NM_058976(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070188 NCBI Caenorhabditis elegans K09B11.4 (K09B11.4) mRNA, complete cds. 11/11 None
NM_058976 NCBI Caenorhabditis elegans T01A4.3 (T01A4.3) mRNA, complete cds. 11/11 A 
SNAP00000011629 ENSEMBL cdna:SNAP chromosome:CEL140:I:4463922:4466648:1 11/11 None
GENEFINDER00000011640 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4464119:4466648:1 11/11 None
SNAP00000037690 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13429509:13429937:1 11/11 None
GENEFINDER00000037712 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13429509:13429937:1 11/11 None
T01A4.3 ENSEMBL cdna:known chromosome:CEL140:I:4463855:4466904:1 gene:T01A4.3 11/11 A 
K09B11.4 ENSEMBL cdna:known chromosome:CEL140:IV:13429509:13429937:1 gene:K09B11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4466222-4466648(+) 97.2 97.2
chrIV:13429514-13429943(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl T01A4.3
K09B11.4
Entrez Gene 187192 Entrez gene
3565304 Entrez gene
SwissProt Q9XU79 EMBL-EBI
Q9TXR3 EMBL-EBI
WormBase CE19991 Wormbase
CE36713 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD47131 Hypothetical protein T01A4.3 [Caenorhabditis elegans] ref|NP_491377.2| T01A4.3 [Caenorhabditis elegans] 0.0
blast CAA21736 Hypothetical protein Y47H9C.9 [Caenorhabditis elegans] ref|NP_493018.1| Y47H9C.9 [Caenorhabditis elegans] 1.0E-137
blast CAA21736 Hypothetical protein Y47H9C.9 [Caenorhabditis elegans] ref|NP_493018.1| Y47H9C.9 [Caenorhabditis elegans] 1.0E-136
blast CAA21736 Hypothetical protein Y47H9C.9 [Caenorhabditis elegans] ref|NP_493018.1| Y47H9C.9 [Caenorhabditis elegans] 1.0E-134
blast CAA87099 Hypothetical protein C34C12.1 [Caenorhabditis elegans] ref|NP_497711.1| C34C12.1 [Caenorhabditis elegans] 5.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.1E-124
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 5.9E-111
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 5.2E-113
Sequence
Target Sequence 
>C. ELEGANS:180718_S_AT
gacatgtcggtgctcaatgaagccctgtgttttctacttggacagcctccctgcggccga
aacgccgtctctgacgcaacttcgtagaattgacgttcttatgcaacaaaaaccttcaca
aaagatcgatccgaaggagatgttgttgatgacatccatgcatcttcctttcccgatgca
agaaccatctaccgaatattttaacgcgatttccggatgctcgacttcgtatatttgtgc
ggaagaaatgggaatcggcttctcattccgacgacacgtggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATGTCGGTGCTCAATGAAGCCC 542 369 15 Antisense
AATGAAGCCCTGTGTTTTCTACTTG 534 165 30 Antisense
CTGTGTTTTCTACTTGGACAGCCTC 644 239 39 Antisense
CCGTCTCTGACGCAACTTCGTAGAA 224 265 79 Antisense
AAACCTTCACAAAAGATCGATCCGA 626 123 124 Antisense
TGATGACATCCATGCATCTTCCTTT 94 567 161 Antisense
TCTTCCTTTCCCGATGCAAGAACCA 331 617 177 Antisense
GCAAGAACCATCTACCGAATATTTT 214 319 192 Antisense
ATATTTTAACGCGATTTCCGGATGC 691 17 210 Antisense
TTCCGGATGCTCGACTTCGTATATT 344 699 225 Antisense
CTTCTCATTCCGACGACACGTGGAA 153 221 273 Antisense
Sequence Source Affymetrix Proprietary Database