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[180717_at]

Description F46H5.5 /REP_DB=WormBase Gene ID /WP=CE04591 /TR=Q20488 /GB=AAB37026.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 10      4grp_high_8_8 > 08      6grp_total > 42      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 144.3
(3)
P 		58.4
(-3)
A 		96.7
(-0.3)
A 		113.2
(0.8)
P 		86
B 108.8
(3)
P 		75.7
(-3)
P 		81.9
(-1.9)
M 		92.2
(-0)
P 		33
C 136.7
(3)
P 		94.1
(-3)
A 		94.4
(-3)
P 		126.6
(1.6)
P 		43
avr 129.9
(3) 		76.1
(-3) 		91
(-1.3) 		110.7
(0.9) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 74.7
(-3)
A 		97.3
(-0.4)
P 		126.8
(3)
P 		111.6
(1.2)
P 		76.3
(-2.8)
P 		91
(-1.1)
P 		52
B 88.4
(1.2)
P 		92.6
(1.5)
P 		109.6
(3)
P 		74.3
(-0)
A 		107.6
(2.8)
P 		39.4
(-3)
A 		70
C 140.4
(3)
P 		86.7
(-1.5)
P 		111.5
(0.6)
P 		119.4
(1.3)
P 		89.9
(-1.2)
P 		68.2
(-3)
A 		72
avr 101.2
(1.2) 		92.2
(0.1) 		116
(3) 		101.8
(1.3) 		91.3
(0) 		66.2
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 52.5
(3)
P 		12.7
(-3)
A 		25.3
(-1.1)
A 		16.6
(-2.4)
P 		40
B 34.7
(3)
P 		18.7
(-3)
P 		19
(-2.9)
M 		19.6
(-2.7)
P 		16
C 45.3
(3)
P 		27
(-1.6)
A 		32.9
(-0.1)
P 		21.3
(-3)
P 		24
avr 44.2
(3) 		19.5
(-2.9) 		25.7
(-1.4) 		19.2
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 13.8
(-3)
A 		34.6
(3)
P 		27.6
(1)
P 		28.3
(1.2)
P 		23
(-0.3)
P 		22.2
(-0.6)
P 		21
B 30.8
(0.3)
P 		30.8
(0.3)
P 		26.6
(-0.5)
P 		19.7
(-2)
A 		43.7
(3)
P 		14.7
(-3)
A 		29
C 52.1
(3)
P 		26.5
(-2.2)
P 		28.4
(-1.9)
P 		24
(-2.8)
P 		29.1
(-1.7)
P 		22.8
(-3)
A 		29
avr 32.2
(3) 		30.6
(2.2) 		27.5
(0.7) 		24
(-1) 		31.9
(2.9) 		19.9
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180717_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16597
Sequence Type Exemplar sequence
Representative Public ID F46H5.5 NCBI
Target Description F46H5.5 /REP_DB=WormBase Gene ID /WP=CE04591 /TR=Q20488 /GB=AAB37026.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076819 NCBI Caenorhabditis elegans F46H5.5 (F46H5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000013764 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7245366:7256924:-1 11/11 None
SNAP00000013755 ENSEMBL cdna:SNAP chromosome:CEL140:X:7255873:7256924:-1 11/11 None
F46H5.5 ENSEMBL cdna:known chromosome:CEL140:X:7255873:7256924:-1 gene:F46H5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7255871-7256923(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46H5.5
Entrez Gene 185881 Entrez gene
SwissProt Q20488 EMBL-EBI
WormBase CE04591 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37023 Hypothetical protein F46H5.4 [Caenorhabditis elegans] ref|NP_509219.1| F46H5.4 [Caenorhabditis elegans] 0.0
blast CAE65862 Hypothetical protein CBG11005 [Caenorhabditis briggsae] 0.0
blast NP_212132 dedicator of cytokinesis 7 [Homo sapiens] emb|CAI13104.1| dedicator of cytokinesis 7 [Homo sapiens] emb|CAI22995.1| dedicator of cytokinesis 7 [Homo sapiens] 0.0
blast AAB37026 Hypothetical protein F46H5.5 [Caenorhabditis elegans] ref|NP_509220.1| F46H5.5 [Caenorhabditis elegans] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR010703 EMBL-EBI Dedicator of cytokinesis 7.5E-114
Sequence
Target Sequence 
>C. ELEGANS:180717_AT
gatcacgtcttcacaatttcttgcagaagggtcggctgtgctggtgtgatccgtaaaaac
tgttgcttcagcgacacacatcatatcgtaaacaattacgagtggggagagcatcggctg
ccgctacccgaaaattggggtacccatgacaacgtgaggctctcttgccatatctatatt
tctgaaaccactggggtaaatcgagatatgttgaaagaatctgcatcgcaaaacaagtca
caggaaagtgtatcatcgccactttcagtttctcaagtagaatctcaagtaatcaagttt
tttggagatttgttactcaatgagaacattgtgtatagtgaagaaggatttgaagcagtg
gaaaaattatctgccctattatcattcccaaacgtgatagaaacctgtcggcaatactta
atgaacattcaatttggaccatctcagctcaatgatactgagctgatgaaacagaacacg
gggttcaatcttactggcttcgatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCACGTCTTCACAATTTCTTGCA 408 421 256 Antisense
CTTGCAGAAGGGTCGGCTGTGCTGG 710 203 275 Antisense
GGCTGTGCTGGTGTGATCCGTAAAA 264 513 289 Antisense
AACTGTTGCTTCAGCGACACACATC 218 143 313 Antisense
GTACCCATGACAACGTGAGGCTCTC 196 459 395 Antisense
GAGGCTCTCTTGCCATATCTATATT 20 407 411 Antisense
ATCGCCACTTTCAGTTTCTCAAGTA 550 37 510 Antisense
AATTATCTGCCCTATTATCATTCCC 6 177 620 Antisense
GAAACCTGTCGGCAATACTTAATGA 113 357 655 Antisense
ATTTGGACCATCTCAGCTCAATGAT 9 19 687 Antisense
GGTTCAATCTTACTGGCTTCGATTA 300 507 737 Antisense
Sequence Source Affymetrix Proprietary Database