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[180716_at]

Description H02I12.2 /REP_DB=WormBase Gene ID /WP=CE16159 /TR=O45600 /GB=CAB07216.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 18      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 4.6
(-2.7)
A 		36.5
(2.8)
A 		3
(-3)
A 		37.4
(3)
A 		34
B 5.3
(3)
A 		4.8
(2)
A 		2.2
(-3)
A 		3.8
(0.1)
A 		3
C 1.8
(-3)
A 		5
(-2.5)
A 		10
(-1.7)
A 		40.7
(3)
A 		39
avr 3.9
(-3) 		15.4
(-0.1) 		5.1
(-2.7) 		27.3
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.4
(-1.4)
A 		18.6
(3)
A 		2.8
(-2.7)
A 		3.4
(-2.5)
A 		2.1
(-3)
A 		5.6
(-1.7)
A 		17
B 18.4
(3)
A 		9.2
(-0.5)
A 		11.9
(0.5)
A 		10.5
(0)
A 		3.6
(-2.6)
A 		2.6
(-3)
A 		16
C 19
(3)
A 		3.7
(-2.3)
A 		3.7
(-2.3)
A 		5.7
(-1.6)
A 		1.8
(-3)
A 		2.3
(-2.8)
A 		17
avr 14.6
(3) 		10.5
(1) 		6.1
(-1.2) 		6.5
(-1) 		2.5
(-3) 		3.5
(-2.5) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.7
(-2.2)
A 		7.9
(3)
A 		0.8
(-3)
A 		5.5
(1)
A 		7
B 1.7
(3)
A 		1.2
(0.5)
A 		0.5
(-3)
A 		0.8
(-1.5)
A 		1
C 0.6
(-3)
A 		1.4
(-2.2)
A 		3.5
(-0.2)
A 		6.9
(3)
A 		6
avr 1.3
(-3) 		3.5
(1.3) 		1.6
(-2.4) 		4.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.2
(-2.4)
A 		6.6
(3)
A 		0.6
(-3)
A 		0.9
(-2.7)
A 		0.6
(-3)
A 		1.4
(-2.2)
A 		6
B 6.4
(3)
A 		3.1
(-0.7)
A 		2.9
(-0.9)
A 		2.8
(-1)
A 		1.5
(-2.4)
A 		1
(-3)
A 		5
C 7.1
(3)
A 		1.1
(-2.5)
A 		0.9
(-2.7)
A 		1.1
(-2.5)
A 		0.6
(-3)
A 		0.8
(-2.8)
A 		7
avr 4.9
(3) 		3.6
(1.1) 		1.5
(-2.1) 		1.6
(-2) 		0.9
(-3) 		1.1
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8970
Sequence Type Exemplar sequence
Representative Public ID H02I12.2 NCBI
Target Description H02I12.2 /REP_DB=WormBase Gene ID /WP=CE16159 /TR=O45600 /GB=CAB07216.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069745 NCBI Caenorhabditis elegans H02I12.2 (H02I12.2) mRNA, complete cds. 11/11 None
SNAP00000036320 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11378145:11378537:-1 11/11 None
H02I12.2 ENSEMBL cdna:known chromosome:CEL140:IV:11378145:11379319:-1 gene:H02I12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11378150-11379325(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H02I12.2
Entrez Gene 186669 Entrez gene
SwissProt O45600 EMBL-EBI
WormBase CE16159 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07216 Hypothetical protein H02I12.2 [Caenorhabditis elegans] ref|NP_502146.1| H02I12.2 [Caenorhabditis elegans] 7.0E-98
blast CAB07216 Hypothetical protein H02I12.2 [Caenorhabditis elegans] ref|NP_502146.1| H02I12.2 [Caenorhabditis elegans] 1.0E-71
blast AAO91704 Hypothetical protein R08C7.13 [Caenorhabditis elegans] ref|NP_001023331.1| R08C7.13 [Caenorhabditis elegans] 1.0E-45
blast T29660 hypothetical protein R08C7.9 - Caenorhabditis elegans 1.0E-45
blast AAO91704 Hypothetical protein R08C7.13 [Caenorhabditis elegans] ref|NP_001023331.1| R08C7.13 [Caenorhabditis elegans] 2.0E-24
blast T29660 hypothetical protein R08C7.9 - Caenorhabditis elegans 2.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-7
Sequence
Target Sequence 
>C. ELEGANS:180716_AT
tgagagatgttctggtgggtttagaagacaatatacgattttatattcgggccgatagga
ataactttgttgcgtccgcgttcttctcatttgatataaaccaagtccttgaacaacctg
gtaaacgtgaattcattctgaagactagtgaaggacaaacttggaccaatccaggacttg
gagtgagacaatttttggatcatgttcttgaaataggtcatcatccagagctttctattt
tcttcaataagattgattgcgacgaagatacaatttgtgatatgtttgatgttttggcac
ttgaaacattcgcaatgtacatcggaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGAGATGTTCTGGTGGGTTTAGA 364 545 152 Antisense
TATACGATTTTATATTCGGGCCGAT 163 641 183 Antisense
AATAACTTTGTTGCGTCCGCGTTCT 676 119 211 Antisense
TCCGCGTTCTTCTCATTTGATATAA 122 597 226 Antisense
TAAACCAAGTCCTTGAACAACCTGG 358 585 248 Antisense
AACTTGGACCAATCCAGGACTTGGA 344 139 309 Antisense
AATAGGTCATCATCCAGAGCTTTCT 526 173 363 Antisense
TCCAGAGCTTTCTATTTTCTTCAAT 217 591 375 Antisense
GATATGTTTGATGTTTTGGCACTTG 523 425 430 Antisense
TTTTGGCACTTGAAACATTCGCAAT 327 677 443 Antisense
ACATTCGCAATGTACATCGGAAACT 384 103 457 Antisense
Sequence Source Affymetrix Proprietary Database