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[180715_at]

Description Y48B6A.5 /REP_DB=WormBase Gene ID /WP=CE22120 /TR=Q9U2A7 /GB=CAB54441.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 62      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 44.7
(3)
A 		16.6
(-2)
A 		29.1
(0.2)
A 		10.9
(-3)
A 		34
B 9.8
(-2.3)
A 		44.1
(2.3)
A 		49.1
(3)
A 		4.7
(-3)
A 		44
C 49.5
(3)
A 		13.7
(-1.9)
A 		6.1
(-3)
A 		26.8
(-0.1)
A 		43
avr 34.7
(3) 		24.8
(0.1) 		28.1
(1.1) 		14.1
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 7.8
(-3)
A 		7.7
(-3)
A 		62.6
(-0.2)
A 		59.2
(-0.3)
A 		92.7
(1.4)
P 		123.5
(3)
P 		116
B 7.1
(-2.9)
A 		23.7
(-2)
A 		6
(-3)
A 		9.6
(-2.8)
A 		67.9
(0.6)
P 		109.5
(3)
P 		104
C 15.1
(-2.3)
A 		6.2
(-3)
A 		32.2
(-1)
A 		56.7
(1)
A 		40.4
(-0.3)
P 		82.3
(3)
P 		76
avr 10
(-3) 		12.5
(-2.8) 		33.6
(-1.5) 		41.8
(-1) 		67
(0.6) 		105.1
(3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.3
(3)
A 		3.6
(-2.2)
A 		7.6
(-0.6)
A 		1.6
(-3)
A 		15
B 3.1
(-1.8)
A 		10.9
(2.7)
A 		11.4
(3)
A 		1
(-3)
A 		10
C 16.4
(3)
A 		4
(-2.2)
A 		2.1
(-3)
A 		4.5
(-2)
A 		14
avr 11.9
(3) 		6.2
(-0.6) 		7
(-0.1) 		2.4
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 1.4
(-3)
A 		2.7
(-2.7)
A 		13.6
(-0.4)
A 		15
(-0.2)
A 		28
(2.6)
P 		30.1
(3)
P 		29
B 2.5
(-2.8)
A 		7.9
(-2)
A 		1.4
(-3)
A 		2.6
(-2.8)
A 		27.6
(1)
P 		40.8
(3)
P 		39
C 5.6
(-2.1)
A 		1.9
(-3)
A 		8.2
(-1.5)
A 		11.4
(-0.8)
A 		13.1
(-0.4)
P 		27.5
(3)
P 		26
avr 3.2
(-3) 		4.2
(-2.8) 		7.7
(-2.1) 		9.7
(-1.7) 		22.9
(1) 		32.8
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180715_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3240
Sequence Type Exemplar sequence
Representative Public ID Y48B6A.5 NCBI
Target Description Y48B6A.5 /REP_DB=WormBase Gene ID /WP=CE22120 /TR=Q9U2A7 /GB=CAB54441.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064559(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064559 NCBI Caenorhabditis elegans Y48B6A.5 (Y48B6A.5) mRNA, complete cds. 11/11 None
SNAP00000022959 ENSEMBL cdna:SNAP chromosome:CEL140:II:14172827:14176613:-1 11/11 None
GENEFINDER00000022971 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14172827:14175065:-1 11/11 None
Y48B6A.5 ENSEMBL cdna:known chromosome:CEL140:II:14172827:14175065:-1 gene:Y48B6A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14172823-14175062(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48B6A.5
Entrez Gene 190017 Entrez gene
SwissProt Q9U2A7 EMBL-EBI
WormBase CE22120 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54441 Hypothetical protein Y48B6A.5 [Caenorhabditis elegans] ref|NP_496960.1| Y48B6A.5 [Caenorhabditis elegans] 0.0
blast CAE59530 Hypothetical protein CBG02925 [Caenorhabditis briggsae] 1.0E-171
blast CAE59530 Hypothetical protein CBG02925 [Caenorhabditis briggsae] 1.0E-144
blast CAE68999 Hypothetical protein CBG14988 [Caenorhabditis briggsae] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 7.4E-23
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 7.4E-23
Sequence
Target Sequence 
>C. ELEGANS:180715_AT
gctggatgtgagcactgccgtcagcttcctcccttcattggcaatgcaaaccactcaaaa
tgtgtctccagactatgtctacaacactgcagcaccaaagactgaaccacttgaggaaga
atctgttgaaccatgctccacaattcgaatcaaccatcagaagaaaaactttgaaacaat
gtcagcaatgactgtgacttgtggtggagccgcggatcttgttacagttccatcggatag
aatcacgtttagtgcagagctccgcgagttgacaattcaagtgacgaatatctcccagct
tcatgtcatgtttgctctgaagaccaacgcggacactcatctcattgctgctccaaccac
cggaattattttgagcggacaaagcatgggtattcgtgtcggtgtcactgacaacttctt
caaaacttgtgccgatcctggaaaatctattgataaactcgccattgactacgcctcgat
ccctcaacaattgtcatcttcagtttccaagttttctccacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGATGTGAGCACTGCCGTCAGC 39 295 711 Antisense
GTTGAACCATGCTCCACAATTCGAA 455 439 835 Antisense
TGACTGTGACTTGTGGTGGAGCCGC 489 569 899 Antisense
GCGGATCTTGTTACAGTTCCATCGG 150 293 922 Antisense
TCACGTTTAGTGCAGAGCTCCGCGA 360 625 953 Antisense
CAAGTGACGAATATCTCCCAGCTTC 608 183 988 Antisense
GTTTGCTCTGAAGACCAACGCGGAC 400 447 1020 Antisense
CTTCAAAACTTGTGCCGATCCTGGA 660 221 1128 Antisense
TGATAAACTCGCCATTGACTACGCC 411 565 1161 Antisense
GATCCCTCAACAATTGTCATCTTCA 109 417 1188 Antisense
TCAGTTTCCAAGTTTTCTCCACAAT 247 623 1210 Antisense
Sequence Source Affymetrix Proprietary Database