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[180714_at]

Description F58H7.7 /REP_DB=WormBase Gene ID /WP=CE17935 /TR=O45093 /GB=AAC02596.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 2.4
(-3)
A 		26.5
(3)
A 		3.8
(-2.7)
A 		9.1
(-1.3)
A 		24
B 7.8
(2.1)
A 		2.4
(-3)
A 		5.5
(-0.1)
A 		8.8
(3)
A 		6
C 19.4
(1)
A 		25.2
(3)
A 		25.1
(3)
A 		7.6
(-3)
A 		18
avr 9.9
(-2.1) 		18
(3) 		11.5
(-1.1) 		8.5
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 25.5
(0.4)
A 		14.9
(-1.1)
A 		1.1
(-3)
A 		44.4
(3)
A 		28.4
(0.8)
A 		5.5
(-2.4)
A 		43
B 15.4
(0.2)
A 		20.8
(1.7)
A 		14.1
(-0.1)
A 		8.9
(-1.5)
A 		25.5
(3)
A 		3.5
(-3)
A 		22
C 25.1
(-1.1)
A 		51.1
(1.7)
A 		7.7
(-3)
A 		62.8
(3)
A 		16.4
(-2.1)
A 		38.3
(0.3)
P 		55
avr 22
(-0.2) 		28.9
(1.1) 		7.6
(-3) 		38.7
(3) 		23.4
(0) 		15.8
(-1.4) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-3)
A 		5.7
(3)
A 		1
(-2.9)
A 		1.3
(-2.5)
A 		5
B 2.5
(3)
A 		0.6
(-3)
A 		1.3
(-0.8)
A 		1.9
(1.1)
A 		2
C 6.4
(1.1)
A 		7.2
(1.8)
A 		8.7
(3)
A 		1.3
(-3)
A 		7
avr 3.3
(0.6) 		4.5
(3) 		3.7
(1.4) 		1.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.7
(-0.6)
A 		5.3
(-0.2)
A 		0.2
(-3)
A 		11.3
(3)
A 		8.6
(1.5)
A 		1.3
(-2.4)
A 		11
B 5.3
(-0.4)
A 		6.9
(0.7)
A 		3.4
(-1.6)
A 		2.4
(-2.3)
A 		10.4
(3)
A 		1.3
(-3)
A 		9
C 9.3
(0.2)
A 		15.6
(3)
A 		2
(-3)
A 		12.6
(1.7)
A 		5.3
(-1.5)
A 		12.8
(1.8)
P 		14
avr 6.4
(0.6) 		9.3
(3) 		1.9
(-3) 		8.8
(2.6) 		8.1
(2) 		5.1
(-0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11070
Sequence Type Exemplar sequence
Representative Public ID F58H7.7 NCBI
Target Description F58H7.7 /REP_DB=WormBase Gene ID /WP=CE17935 /TR=O45093 /GB=AAC02596.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067608, NM_067606, NM_067607, NM_067609, NM_067611
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022294 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:909415:913536:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067611 8/11 Cross Hyb Matching Probes A 
SNAP00000022279 5/11 Cross Hyb Matching Probes None
F58H7.7 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:909420-913173(+) 94.05 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02596 Hypothetical protein F58H7.7 [Caenorhabditis elegans] ref|NP_500012.2| F58H7.7 [Caenorhabditis elegans] 0.0
blast NP_493863 C32B5.9 [Caenorhabditis elegans] gb|AAB37964.1| Hypothetical protein C32B5.9 [Caenorhabditis elegans] 1.0E-137
blast AAC68939 Hypothetical protein C44C8.1 [Caenorhabditis elegans] ref|NP_500010.1| C44C8.1 [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.2E-4
Sequence
Target Sequence 
>C. ELEGANS:180714_AT
agaagtctcatcattgttggcacactttccatcggatgtcgagtgattccgtccagtctg
aagtttaagaccggtgacttggaattaggatgtgaggataatattaagctctttgaggag
atcaaaccactgctgcatctcacttctttccctctaaactatatttctctctacaacagc
tataacttaagggatgaagatccagttgttgaatccactggtgttcttatttttaaaaat
atttcttcctttgataataatgagctcgaaaattttaataagctccgtcgcaagcgagtt
cacttatcagcagaacccttcactttttatgagccatttccgcctcggagccgccctttt
tatgagctcttaactcaaagaaagaccccaaaattgggagtatcttttttggaatcagca
ggaagtgaagctcaacaaaaatttgttaattggcaaaatttggagcatagaaagaacgaa
cgaaatcggtgcagtacaacgatttctacggcaactacaatccacgaggaggagaaactc
cagttcaaaccgccgccaaactacagaaggtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGTCTCATCATTGTTGGCACAC 352 75 1678 Antisense
GGATGTCGAGTGATTCCGTCCAGTC 702 513 1711 Antisense
AGGAGATCAAACCACTGCTGCATCT 451 55 1793 Antisense
TTCTTTCCCTCTAAACTATATTTCT 292 689 1821 Antisense
ACTATATTTCTCTCTACAACAGCTA 165 101 1835 Antisense
ACTTATCAGCAGAACCCTTCACTTT 365 103 1979 Antisense
GAACCCTTCACTTTTTATGAGCCAT 52 345 1990 Antisense
CGCCCTTTTTATGAGCTCTTAACTC 99 255 2029 Antisense
GCAGTACAACGATTTCTACGGCAAC 366 311 2168 Antisense
CTACGGCAACTACAATCCACGAGGA 650 223 2183 Antisense
ACCGCCGCCAAACTACAGAAGGTCG 459 87 2226 Antisense
Sequence Source Affymetrix Proprietary Database