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[180711_at]

Description D1014.2 /REP_DB=WormBase Gene ID /WP=CE07004 /TR=Q18923 /GB=AAA96289.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 52.4
(-0.2)
A 		49.1
(-0.6)
A 		27.5
(-3)
A 		80.7
(3)
A 		53
B 46.7
(2.3)
M 		18.7
(-1)
A 		1.6
(-3)
A 		52.8
(3)
A 		51
C 39.1
(-1.5)
M 		25
(-2.5)
A 		17.7
(-3)
A 		101.3
(3)
M 		84
avr 46.1
(-0.1) 		30.9
(-1.5) 		15.6
(-3) 		78.3
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 9.3
(-1.8)
A 		17.3
(0)
A 		27.8
(2.5)
A 		4.4
(-3)
A 		29.9
(3)
A 		6.9
(-2.4)
A 		26
B 58.9
(3)
A 		15
(-1.8)
A 		3.9
(-3)
A 		36.4
(0.5)
A 		31.2
(-0)
A 		35.1
(0.4)
A 		55
C 32.7
(2.9)
A 		33.1
(3)
A 		3.3
(-3)
A 		5.1
(-2.6)
A 		3.1
(-3)
A 		24.1
(1.2)
A 		30
avr 33.6
(3) 		21.8
(-0.2) 		11.7
(-3) 		15.3
(-2) 		21.4
(-0.3) 		22
(-0.2) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.1
(3)
A 		10.7
(-1.2)
A 		7.2
(-3)
A 		11.8
(-0.7)
A 		12
B 14.9
(3)
M 		4.6
(-1.3)
A 		0.4
(-3)
A 		11.3
(1.5)
A 		15
C 12.9
(0.7)
M 		7.2
(-2.4)
A 		6.2
(-3)
A 		17.1
(3)
M 		11
avr 15.6
(3) 		7.5
(-1.4) 		4.6
(-3) 		13.4
(1.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.7
(-2.5)
A 		6.1
(0.8)
A 		6
(0.7)
A 		1.1
(-3)
A 		9
(3)
A 		1.7
(-2.5)
A 		8
B 20.5
(3)
A 		5
(-1.8)
A 		1
(-3)
A 		9.6
(-0.4)
A 		12.7
(0.6)
A 		13.1
(0.7)
A 		20
C 12.1
(3)
A 		10.1
(1.9)
A 		0.8
(-3)
A 		1
(-2.9)
A 		1
(-2.9)
A 		8.1
(0.9)
A 		11
avr 11.4
(3) 		7.1
(0.1) 		2.6
(-3) 		3.9
(-2.1) 		7.6
(0.4) 		7.6
(0.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180711_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11439
Sequence Type Exemplar sequence
Representative Public ID D1014.2 NCBI
Target Description D1014.2 /REP_DB=WormBase Gene ID /WP=CE07004 /TR=Q18923 /GB=AAA96289.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072700 NCBI Caenorhabditis elegans D1014.2 (D1014.2) mRNA, complete cds. 11/11 None
SNAP00000031802 ENSEMBL cdna:SNAP chromosome:CEL140:V:8146496:8147962:1 11/11 None
GENEFINDER00000031810 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8146496:8154582:1 11/11 None
D1014.2 ENSEMBL cdna:known chromosome:CEL140:V:8146352:8149444:1 gene:D1014.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8146352-8149445(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1014.2
Entrez Gene 183895 Entrez gene
SwissProt Q18923 EMBL-EBI
WormBase CE07004 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_505101 D1014.2 [Caenorhabditis elegans] gb|AAA96289.1| Hypothetical protein D1014.2 [Caenorhabditis elegans] 0.0
blast CAE66120 Hypothetical protein CBG11342 [Caenorhabditis briggsae] 1.0E-163
blast NP_505101 D1014.2 [Caenorhabditis elegans] gb|AAA96289.1| Hypothetical protein D1014.2 [Caenorhabditis elegans] 1.0E-160
blast CAE66120 Hypothetical protein CBG11342 [Caenorhabditis briggsae] 1.0E-144
blast CAA77580 Hypothetical protein F59B2.13 [Caenorhabditis elegans] ref|NP_498999.2| F59B2.13 [Caenorhabditis elegans] sp|P34488|YMJC_CAEEL Putative G-protein coupled receptor F59B2.13 4.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505101.1 7 77-96,109-131,146-168,189-211,226-248,282-304,319-341
D1014.2 7 77-96,109-131,146-168,189-211,226-248,282-304,319-341
SNAP00000031802 7 29-48,61-83,98-120,141-163,178-200,234-256,271-293
GENEFINDER00000031810 7 29-48,61-83,98-120,141-163,178-200,234-256,271-293
Sequence
Target Sequence 
>C. ELEGANS:180711_AT
atgctcgttatgtcgtgtacatccatatgatctttgtggtgatcattccaatgtttctat
caacatctctaaacattcttcttgtatgtgcacttcggaaaaactcaatgccgttaagaa
tgctaaatgattcacacgtgcatcaaagtctgatcgtgcaaagaacacggacagagagaa
aggtgactgcaatggttacagtaatccttagctccttcattgcttgcaatgtcccaggat
ctattgtatttgtgatgaaagaaagcgatgacactttcgacgatagccgtcgacacatcc
tcatgcaagcagtctgcaattcattggctgtcacgggaaaagtcctcaacttccttctct
tctgtctttcttcagagcatttccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCGTTATGTCGTGTACATCCA 452 41 668 Antisense
ATCAACATCTCTAAACATTCTTCTT 524 27 726 Antisense
TTCTTCTTGTATGTGCACTTCGGAA 226 689 743 Antisense
GATTCACACGTGCATCAAAGTCTGA 434 431 796 Antisense
TGGTTACAGTAATCCTTAGCTCCTT 573 551 860 Antisense
CATTGCTTGCAATGTCCCAGGATCT 296 215 885 Antisense
GATGACACTTTCGACGATAGCCGTC 123 413 934 Antisense
GACACATCCTCATGCAAGCAGTCTG 229 367 959 Antisense
TCATTGGCTGTCACGGGAAAAGTCC 505 603 988 Antisense
GGAAAAGTCCTCAACTTCCTTCTCT 185 529 1003 Antisense
CTGTCTTTCTTCAGAGCATTTCCGT 549 239 1029 Antisense
Sequence Source Affymetrix Proprietary Database