[Home] | [Total List]

[180710_at] 7TM chemoreceptor, srsx family

Description C39H7.5 /REP_DB=WormBase Gene ID /WP=CE06944 /TR=Q18551 /GB=AAB00672.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 27      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 9.3
(-0.4)
A 		7.3
(-1.7)
A 		5.2
(-3)
A 		14.7
(3)
A 		10
B 4.1
(-3)
A 		45.3
(3)
A 		4.7
(-2.9)
A 		16.3
(-1.2)
A 		41
C 6.3
(-2.6)
A 		8.6
(-2.4)
A 		2.2
(-3)
A 		65.5
(3)
A 		63
avr 6.6
(-2.4) 		20.4
(0.5) 		4
(-3) 		32.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.3
(-3)
A 		9
(3)
A 		7.6
(1.2)
A 		5.1
(-2)
A 		5.7
(-1.2)
A 		7.2
(0.7)
A 		5
B 5.3
(-2.4)
A 		8.7
(-1.2)
A 		10.8
(-0.4)
A 		4
(-2.9)
A 		19.8
(3)
A 		3.8
(-3)
A 		16
C 3.2
(-3)
A 		10.7
(2.6)
A 		8.1
(0.6)
A 		8.7
(1.1)
A 		11.3
(3)
A 		3.2
(-3)
A 		8
avr 4.3
(-3) 		9.5
(0.9) 		8.8
(0.4) 		5.9
(-1.8) 		12.3
(3) 		4.7
(-2.7) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.4
(3)
A 		1.6
(-2.4)
A 		1.4
(-3)
A 		2.1
(-0.9)
A 		2
B 1.3
(-2.9)
A 		11.2
(3)
A 		1.1
(-3)
A 		3.5
(-1.6)
A 		10
C 2.1
(-2.2)
A 		2.5
(-2)
A 		0.7
(-3)
A 		11
(3)
A 		10
avr 2.3
(-1.4) 		5.1
(2.5) 		1.1
(-3) 		5.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.8
(-3)
A 		3.2
(3)
A 		1.6
(-1)
A 		1.3
(-1.8)
A 		1.7
(-0.8)
A 		1.8
(-0.5)
A 		2
B 1.8
(-2.4)
A 		2.9
(-1.4)
A 		2.6
(-1.7)
A 		1.1
(-3)
A 		8
(3)
A 		1.4
(-2.7)
A 		7
C 1.2
(-2.8)
A 		3.3
(2.1)
A 		2
(-0.9)
A 		1.7
(-1.6)
A 		3.7
(3)
A 		1.1
(-3)
A 		3
avr 1.3
(-3) 		3.1
(0.4) 		2.1
(-1.5) 		1.4
(-2.8) 		4.5
(3) 		1.4
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180710_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10952
Sequence Type Exemplar sequence
Representative Public ID C39H7.5 NCBI
Target Description C39H7.5 /REP_DB=WormBase Gene ID /WP=CE06944 /TR=Q18551 /GB=AAB00672.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068434(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068434 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-14) (srsx-14) mRNA, complete cds. 11/11 None
SNAP00000020748 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5624840:5625804:-1 9/11 None
GENEFINDER00000020758 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5624840:5627141:-1 11/11 None
C39H7.5 ENSEMBL cdna:known chromosome:CEL140:IV:5624840:5626498:-1 gene:C39H7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5624845-5626504(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-14
Ensembl C39H7.5
Entrez Gene 183350 Entrez gene
SwissProt Q18551 EMBL-EBI
WormBase CE38156 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00672 Serpentine receptor, class sx protein 14 [Caenorhabditis elegans] ref|NP_500835.2| Serpentine Receptor, class SX family member (srsx-14) [Caenorhabditis elegans] 1.0E-170
blast AAB00672 Serpentine receptor, class sx protein 14 [Caenorhabditis elegans] ref|NP_500835.2| Serpentine Receptor, class SX family member (srsx-14) [Caenorhabditis elegans] 1.0E-139
blast AAX22292 Serpentine receptor, class sx protein 15 [Caenorhabditis elegans] ref|NP_001023054.1| Serpentine Receptor, class SX family member (srsx-15) [Caenorhabditis elegans] 3.0E-92
blast CAE72687 Hypothetical protein CBG19907 [Caenorhabditis briggsae] 1.0E-84
blast CAE72687 Hypothetical protein CBG19907 [Caenorhabditis briggsae] 2.0E-84
blast AAB00672 Serpentine receptor, class sx protein 14 [Caenorhabditis elegans] ref|NP_500835.2| Serpentine Receptor, class SX family member (srsx-14) [Caenorhabditis elegans] 2.0E-84
blast AAX22292 Serpentine receptor, class sx protein 15 [Caenorhabditis elegans] ref|NP_001023054.1| Serpentine Receptor, class SX family member (srsx-15) [Caenorhabditis elegans] 1.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500835.2 7 13-35,48-67,87-109,130-152,176-198,219-241,251-273
C39H7.5 5 20-42,63-85,109-131,152-174,184-206
SNAP00000020748 3 37-59,80-102,112-134
GENEFINDER00000020758 7 13-35,48-67,87-109,130-152,176-198,219-241,251-273
Sequence
Target Sequence 
>C. ELEGANS:180710_AT
gttcccgtgtactttgtgatcttatttttgttaccagttgcatatggagctatttttgta
ggatttggatttatgtatctcgttgaggaagctttgccgatgtgcaatccaccatcggct
cttcatccaattgtcagatcctattggtattatgttatgacggctttctccgtattaact
gtaattttctatgtttctgcgtttgctcttatctatttcaagggccgccgtgagaataca
gatcttcgatttattgagagaaaagccctgaacacactgaaatatttgatacttttattt
ctaatgtttcgatttatcactattacgattacaagtattatgattgcaattaggattgat
caggaagttgtcgaaatggtacaaaactataatgttctcgcggtggtcgttgcttattca
cagaatgcttatatttgctactacagaagttcggagtatcgaagactgctcagcgagcaa
atttcaaagattcatccaaaattgggagcacttttaccaaaattatcaaatgagtcaagt
agtattgtaggacaacgttggcgaaactctactgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCCGTGTACTTTGTGATCTTAT 600 441 187 Antisense
CTTTGCCGATGTGCAATCCACCATC 362 223 278 Antisense
GGCTCTTCATCCAATTGTCAGATCC 682 537 303 Antisense
CGGCTTTCTCCGTATTAACTGTAAT 683 239 347 Antisense
ATTTTCTATGTTTCTGCGTTTGCTC 389 15 370 Antisense
GCTCTTATCTATTTCAAGGGCCGCC 73 299 391 Antisense
AGGGCCGCCGTGAGAATACAGATCT 260 59 407 Antisense
TATAATGTTCTCGCGGTGGTCGTTG 154 641 574 Antisense
TGGTCGTTGCTTATTCACAGAATGC 31 553 590 Antisense
GAGTATCGAAGACTGCTCAGCGAGC 694 397 640 Antisense
GACAACGTTGGCGAAACTCTACTGT 108 365 737 Antisense
Sequence Source Affymetrix Proprietary Database