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[180708_at]

Description C37H5.4 /REP_DB=WormBase Gene ID /WP=CE08628 /TR=P91140 /GB=AAB42368.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 27      6grp_cgc > 08      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 5.7
(-3)
A 		55.8
(3)
A 		9
(-2.6)
A 		41
(1.2)
A 		50
B 14
(-1.6)
A 		33.9
(3)
A 		7.8
(-3)
A 		29.6
(2)
A 		26
C 33.8
(-1.8)
A 		26.8
(-3)
A 		37.4
(-1.2)
A 		61.6
(3)
A 		35
avr 17.8
(-3) 		38.8
(1.8) 		18.1
(-2.9) 		44.1
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 19.8
(-0.3)
A 		11
(-1.9)
A 		5.6
(-2.9)
A 		4.8
(-3)
A 		37.9
(3)
M 		30.3
(1.6)
A 		33
B 23.6
(3)
A 		3.1
(-3)
A 		5.1
(-2.4)
A 		7.3
(-1.8)
A 		4
(-2.7)
A 		4.7
(-2.5)
A 		21
C 7.4
(3)
A 		6.6
(2.2)
A 		6.3
(2)
A 		5.4
(1.1)
A 		3.3
(-0.9)
A 		1.1
(-3)
A 		6
avr 16.9
(3) 		6.9
(-2.4) 		5.7
(-3) 		5.8
(-2.9) 		15.1
(2) 		12
(0.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.1
(-3)
A 		12.1
(3)
A 		2.3
(-2.9)
A 		6
(-0.7)
A 		10
B 4.5
(-0.5)
A 		8.4
(3)
A 		1.8
(-3)
A 		6.3
(1.1)
A 		7
C 11.2
(1)
A 		7.7
(-3)
A 		13
(3)
A 		10.4
(0.1)
A 		5
avr 5.9
(-2.7) 		9.4
(3) 		5.7
(-3) 		7.6
(0.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.6
(-1.6)
A 		3.9
(-1.4)
A 		1.2
(-3)
A 		1.2
(-3)
A 		11.4
(3)
M 		7.4
(0.6)
A 		10
B 8.2
(3)
A 		1
(-3)
A 		1.2
(-2.8)
A 		1.9
(-2.3)
A 		1.6
(-2.5)
A 		1.8
(-2.3)
A 		7
C 2.8
(3)
A 		2
(1)
A 		1.6
(0)
A 		1.1
(-1.3)
A 		1.1
(-1.3)
A 		0.4
(-3)
A 		2
avr 4.9
(3) 		2.3
(-1.3) 		1.3
(-3) 		1.4
(-2.8) 		4.7
(2.7) 		3.2
(0.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180708_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15592
Sequence Type Exemplar sequence
Representative Public ID C37H5.4 NCBI
Target Description C37H5.4 /REP_DB=WormBase Gene ID /WP=CE08628 /TR=P91140 /GB=AAB42368.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071895(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071895 NCBI Caenorhabditis elegans Coexpressed With Polycystins family member (cwp-3) (cwp-3) mRNA, complete cds. 9/11 None
SNAP00000016588 ENSEMBL cdna:SNAP chromosome:CEL140:V:4842650:4843659:1 9/11 None
GENEFINDER00000016599 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4842586:4843659:1 9/11 None
C37H5.4 ENSEMBL cdna:known chromosome:CEL140:V:4842650:4843659:1 gene:C37H5.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4842415-4843659(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cwp-3
Ensembl C37H5.4
Entrez Gene 183296 Entrez gene
SwissProt P91140 EMBL-EBI
WormBase CE33278 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42368 Coexpressed with polycystins protein 3 [Caenorhabditis elegans] ref|NP_504296.2| Coexpressed With Polycystins family member (cwp-3) [Caenorhabditis elegans] 7.0E-86
blast AAB42368 Coexpressed with polycystins protein 3 [Caenorhabditis elegans] ref|NP_504296.2| Coexpressed With Polycystins family member (cwp-3) [Caenorhabditis elegans] 1.0E-83
blast AAB42368 Coexpressed with polycystins protein 3 [Caenorhabditis elegans] ref|NP_504296.2| Coexpressed With Polycystins family member (cwp-3) [Caenorhabditis elegans] 3.0E-78
Sequence
Target Sequence 
>C. ELEGANS:180708_AT
gcggagcgtgtaaccatgcatcaccatggttacatttggatacgacaacgttttattcgg
aaaatgatgacattttgatgagctccatcaaaaagcaatttttcccatacaaaacgtctc
cgtatccaacatttaatttttctaaaatgatcttgaagccagcttttctctttgctagcg
tacttgctgtaactgcggaagagataatcaagtcagatgcataccgttccaactccgatt
gctctttgggaaagaagaagcatggcgtaaaacttagtggtactcacaatcagctcgaca
aggactcgacaatgaccgatattttagactccgtgacacgtggtgactgcaatctccaga
agacgacttctgaggatgggaccatgaccgagttgcttgaaataataacctcaggagcac
tggaccaagattctggtgttatatgtggatgtagcaagtcgaaagccacaaaaatctgtt
caaaatccagaaaaacccagaagcagatgtttgagaatgacgcgatttcccagaatcttg
cagatttgccagatttaccagttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGAGCGTGTAACCATGCATCACC 212 293 44 Antisense
AACGTCTCCGTATCCAACATTTAAT 104 143 156 Antisense
TTTTCTCTTTGCTAGCGTACTTGCT 391 675 207 Antisense
CAAGTCAGATGCATACCGTTCCAAC 710 181 252 Antisense
TTCCAACTCCGATTGCTCTTTGGGA 300 699 270 Antisense
GTACTCACAATCAGCTCGACAAGGA 133 459 323 Antisense
GACCGATATTTTAGACTCCGTGACA 306 381 357 Antisense
GTGACACGTGGTGACTGCAATCTCC 24 483 376 Antisense
GGACCATGACCGAGTTGCTTGAAAT 565 521 422 Antisense
TGACGCGATTTCCCAGAATCTTGCA 145 571 561 Antisense
GCAGATTTGCCAGATTTACCAGTTG 51 311 583 Antisense
Sequence Source Affymetrix Proprietary Database