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[180706_at]

Description K06H6.2 /REP_DB=WormBase Gene ID /WP=CE11830 /TR=O17108 /GB=AAB70362.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 8.4
(-3)
A 		8.9
(-3)
A 		90.5
(3)
A 		10.4
(-2.9)
A 		82
B 16.9
(-2.3)
A 		12.9
(-3)
A 		21
(-1.6)
A 		47.8
(3)
A 		35
C 11.7
(-3)
A 		11.6
(-3)
A 		79.8
(3)
A 		55.1
(0.8)
A 		68
avr 12.3
(-2.9) 		11.1
(-3) 		63.8
(3) 		37.8
(0) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 15.4
(-1.7)
A 		33.4
(0.8)
A 		35.7
(1.1)
A 		5.5
(-3)
A 		6.9
(-2.8)
A 		49.8
(3)
A 		44
B 64.5
(2.3)
A 		10.5
(-2.7)
A 		7
(-3)
A 		47.3
(0.7)
A 		72.6
(3)
A 		40.1
(0)
A 		66
C 10.2
(-2.7)
A 		11.3
(-2.6)
A 		81.7
(3)
A 		6.5
(-3)
A 		10.9
(-2.6)
A 		10.5
(-2.7)
A 		75
avr 30
(0) 		18.4
(-3) 		41.5
(3) 		19.8
(-2.6) 		30.1
(0) 		33.5
(0.9) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3
(-2.6)
A 		1.9
(-2.9)
A 		23.7
(3)
A 		1.5
(-3)
A 		22
B 5.4
(-1.1)
A 		3.2
(-3)
A 		4.9
(-1.5)
A 		10.2
(3)
A 		7
C 3.9
(-2.9)
A 		3.3
(-3)
A 		27.8
(3)
A 		9.3
(-1.5)
A 		25
avr 4.1
(-2.5) 		2.8
(-3) 		18.8
(3) 		7
(-1.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 2.8
(-2.2)
A 		11.9
(2.9)
A 		7.8
(0.6)
A 		1.4
(-3)
A 		2.1
(-2.6)
A 		12.1
(3)
A 		11
B 22.4
(1.5)
A 		3.5
(-2.6)
A 		1.7
(-3)
A 		12.5
(-0.7)
A 		29.5
(3)
A 		14.9
(-0.2)
A 		28
C 3.8
(-2.2)
A 		3.4
(-2.4)
A 		20.8
(3)
A 		1.3
(-3)
A 		3.5
(-2.3)
A 		3.5
(-2.3)
A 		20
avr 9.7
(1.2) 		6.3
(-1.9) 		10.1
(1.5) 		5.1
(-3) 		11.7
(3) 		10.2
(1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15585
Sequence Type Exemplar sequence
Representative Public ID K06H6.2 NCBI
Target Description K06H6.2 /REP_DB=WormBase Gene ID /WP=CE11830 /TR=O17108 /GB=AAB70362.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070853 NCBI Caenorhabditis elegans K06H6.2 (K06H6.2) mRNA, complete cds. 11/11 None
SNAP00000003554 ENSEMBL cdna:SNAP chromosome:CEL140:V:584111:587079:1 11/11 None
GENEFINDER00000003556 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:585677:587079:1 11/11 None
K06H6.2 ENSEMBL cdna:known chromosome:CEL140:V:585677:587079:1 gene:K06H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:585676-587079(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06H6.2
Entrez Gene 187071 Entrez gene
SwissProt O17108 EMBL-EBI
WormBase CE11830 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70362 Hypothetical protein K06H6.2 [Caenorhabditis elegans] ref|NP_503254.1| K06H6.2 [Caenorhabditis elegans] 1.0E-154
blast AAB70362 Hypothetical protein K06H6.2 [Caenorhabditis elegans] ref|NP_503254.1| K06H6.2 [Caenorhabditis elegans] 1.0E-147
blast AAK85471 Hypothetical protein F28A10.5 [Caenorhabditis elegans] ref|NP_493833.1| F28A10.5 [Caenorhabditis elegans] 8.0E-86
blast AAK85471 Hypothetical protein F28A10.5 [Caenorhabditis elegans] ref|NP_493833.1| F28A10.5 [Caenorhabditis elegans] 5.0E-85
blast CAB54371 Hypothetical protein Y105C5B.23 [Caenorhabditis elegans] ref|NP_502912.1| Y105C5B.23 [Caenorhabditis elegans] 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503254.1 1 7-29
K06H6.2 1 7-29
GENEFINDER00000003556 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:180706_AT
gaaaatggaggcctattgtgctgtaaaagaaagaattggaggaaacggagacggtggaaa
acttgtatgtaatccgaagttggtgaaggaggactgcactttactctcactcggtctgca
caatcaaattggctacgacggtcacatttataatgtcaccggaaaacagtgcaaaattct
cggtgctgacaaggaccctcaaaaccccaaaactcaaacctcctacgaaaaaatgaacgg
tcaaatttttgtcggaaaaattcccgacgaactcacacttccctcaatgctccagcagtc
ggggagaaatgaggtggagctgctgaaaatcgacatcgaaggaggagagttcaccgggtt
ggagccgctgatcagtgaacattttgtgtgccagatcttcatcgaagtgcacgggacgcc
agctgagcacctgtcaatgctccgaatgatgtcaaagtatggcttccgtttgttcagcct
tgaggaaaatccatattgtgtgagatgctgtgaatatagtcttatcaacgagctctgtat
ggcccaattcggagtagtgccgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATGGAGGCCTATTGTGCTGTA 628 351 285 Antisense
AAGGAGGACTGCACTTTACTCTCAC 601 159 370 Antisense
CTCACTCGGTCTGCACAATCAAATT 583 227 390 Antisense
TCAAATTGGCTACGACGGTCACATT 541 625 408 Antisense
AATTCTCGGTGCTGACAAGGACCCT 235 175 459 Antisense
GTTGGAGCCGCTGATCAGTGAACAT 564 435 642 Antisense
GTGCCAGATCTTCATCGAAGTGCAC 11 479 672 Antisense
GCCAGCTGAGCACCTGTCAATGCTC 700 277 702 Antisense
GCACCTGTCAATGCTCCGAATGATG 435 315 711 Antisense
AGTATGGCTTCCGTTTGTTCAGCCT 396 63 740 Antisense
GGCCCAATTCGGAGTAGTGCCGCTG 252 501 825 Antisense
Sequence Source Affymetrix Proprietary Database