[Home] | [Total List]

[180705_at]

Description C01B7.5 /REP_DB=WormBase Gene ID /WP=CE06729 /TR=Q17550 /GB=AAA96116.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_high_8_8 > 17      6grp_highest_nonorm > 90      6grp_total > 07      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 203.2
(3)
P 		95.6
(-1.6)
P 		62.1
(-3)
A 		126.5
(-0.3)
P 		141
B 247.7
(3)
P 		103.3
(-1.7)
P 		63.8
(-3)
P 		168.5
(0.4)
P 		184
C 203.8
(3)
P 		61.2
(-3)
A 		95.1
(-1.6)
P 		163.2
(1.3)
P 		143
avr 218.2
(3) 		86.7
(-2.5) 		73.7
(-3) 		152.7
(0.3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 123
(3)
P 		75.3
(-1.7)
P 		115.5
(2.3)
P 		89.6
(-0.3)
P 		82.5
(-1)
P 		61.5
(-3)
P 		62
B 170.5
(3)
P 		98.2
(-0.9)
P 		99.5
(-0.9)
P 		88.6
(-1.5)
P 		60.4
(-3)
P 		110.7
(-0.3)
P 		110
C 121
(2.8)
P 		123.1
(3)
P 		53
(-3)
P 		106
(1.5)
P 		55.3
(-2.8)
P 		115.5
(2.3)
P 		70
avr 138.2
(3) 		98.9
(-0.3) 		89.3
(-1.1) 		94.7
(-0.6) 		66.1
(-3) 		95.9
(-0.5) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 74
(3)
P 		20.8
(-2.5)
P 		16.2
(-3)
A 		18.5
(-2.8)
P 		58
B 79
(3)
P 		25.5
(-2)
P 		14.8
(-3)
P 		35.9
(-1)
P 		64
C 67.5
(3)
P 		17.6
(-3)
A 		33.1
(-1.1)
P 		27.5
(-1.8)
P 		50
avr 73.5
(3) 		21.3
(-3) 		21.4
(-3) 		27.3
(-2.3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 22.7
(0.9)
P 		26.8
(3)
P 		25.2
(2.2)
P 		22.7
(0.9)
P 		24.9
(2)
P 		15
(-3)
P 		12
B 59.3
(3)
P 		32.7
(-1.5)
P 		24.2
(-2.9)
P 		23.5
(-3)
P 		24.5
(-2.8)
P 		41.3
(-0)
P 		36
C 44.9
(3)
P 		37.6
(1.6)
P 		13.5
(-3)
P 		21.3
(-1.5)
P 		17.9
(-2.2)
P 		38.7
(1.8)
P 		31
avr 42.3
(3) 		32.4
(0.2) 		21
(-3) 		22.5
(-2.6) 		22.4
(-2.6) 		31.7
(0) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11800
Sequence Type Exemplar sequence
Representative Public ID C01B7.5 NCBI
Target Description C01B7.5 /REP_DB=WormBase Gene ID /WP=CE06729 /TR=Q17550 /GB=AAA96116.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072865 NCBI Caenorhabditis elegans C01B7.5 (C01B7.5) mRNA, complete cds. 11/11 None
SNAP00000041468 ENSEMBL cdna:SNAP chromosome:CEL140:V:8802738:8803583:-1 9/11 None
GENEFINDER00000041472 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8795604:8803583:-1 11/11 None
C01B7.5 ENSEMBL cdna:known chromosome:CEL140:V:8802738:8803583:-1 gene:C01B7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8802738-8803584(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B7.5
Entrez Gene 182058 Entrez gene
SwissProt Q17550 EMBL-EBI
WormBase CE06729 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96115 Temporarily assigned gene name protein 117 [Caenorhabditis elegans] ref|NP_505265.1| Temporarily Assigned Gene name family member (tag-117) [Caenorhabditis elegans] 0.0
blast CAE57748 Hypothetical protein CBG00761 [Caenorhabditis briggsae] 0.0
blast XP_393395 PREDICTED: similar to ENSANGP00000010751 [Apis mellifera] 8.0E-89
blast AAA96116 Hypothetical protein C01B7.5 [Caenorhabditis elegans] ref|NP_505266.1| C01B7.5 [Caenorhabditis elegans] 1.0E-78
blast CAE57747 Hypothetical protein CBG00760 [Caenorhabditis briggsae] 7.0E-70
blast AAA96116 Hypothetical protein C01B7.5 [Caenorhabditis elegans] ref|NP_505266.1| C01B7.5 [Caenorhabditis elegans] 2.0E-48
blast CAE57747 Hypothetical protein CBG00760 [Caenorhabditis briggsae] 5.0E-41
blast XP_784409 PREDICTED: similar to MAGUK p55 subfamily member 5 (Protein associated with Lin-7 1) [Strongylocentrotus purpuratus] 8.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 8.7E-8
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.0E-8
Pfam IPR008144 EMBL-EBI Guanylate kinase 1.9E-19
Sequence
Target Sequence 
>C. ELEGANS:180705_AT
ccaagtcggtgtcgataccacaggcactgtccgacttgaaaaggacatccttgagacggt
tgagcagtgcacgtggtgttggaaataagaagaccgttgtgagcacttcgacgccgttga
gtggttttgtaattttggttgaacgagaagagaaggttgttcggctgtacggaactgctg
cggaaagagcaggattgagcattggagatgaaatcgttggggtaaatgacatgaaaatag
aaggaaaaagttatgaggaagtcacaacttatattcaagaatgtattcgtcgaaaaatca
ttcagctgaaagttagacgtcgtgcattagaaattccagcagaaaatgaagcttctgttt
ttaactgcacaaattcgaatcgtatgataacggatgcatatctagtttccgtggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAGTCGGTGTCGATACCACAGGC 230 277 17 Antisense
CCACAGGCACTGTCCGACTTGAAAA 477 273 34 Antisense
GGACATCCTTGAGACGGTTGAGCAG 60 527 59 Antisense
GGTTGAGCAGTGCACGTGGTGTTGG 393 507 74 Antisense
GAAGACCGTTGTGAGCACTTCGACG 488 339 105 Antisense
CTTCGACGCCGTTGAGTGGTTTTGT 23 219 122 Antisense
GAGAAGGTTGTTCGGCTGTACGGAA 633 359 166 Antisense
GGCTGTACGGAACTGCTGCGGAAAG 427 539 179 Antisense
GACGTCGTGCATTAGAAATTCCAGC 603 377 332 Antisense
GAAGCTTCTGTTTTTAACTGCACAA 672 341 364 Antisense
GGATGCATATCTAGTTTCCGTGGAT 306 513 408 Antisense
Sequence Source Affymetrix Proprietary Database