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[180704_at]

Description F56C3.9 /REP_DB=WormBase Gene ID /WP=CE17900 /TR=O61761 /GB=AAC17009.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_high_8_8 > 14      6grp_highest_nonorm > 95      6grp_total > 87      4grp_total > 17      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1877
1 2 3 4 range
A 63.7
(-3)
P
478.2
(-1.6)
P
367.5
(-2)
P
1809.3
(3)
P
1746
B 50.5
(-3)
A
497.6
(-1.6)
P
380.5
(-1.9)
P
1927.3
(3)
P
1877
C 52.5
(-3)
M
437.2
(-1.5)
P
377.4
(-1.8)
P
1619.6
(3)
P
1567
avr 55.6
(-3)
471
(-1.6)
375.1
(-1.9)
1785.4
(3)
1730

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1581
1 2 3 4 5 6 range
A 225.5
(-2.9)
P
265.6
(-2.7)
P
194.1
(-3)
P
622.3
(-1.3)
P
752.1
(-0.8)
P
1699
(3)
P
1505
B 117.6
(-3)
P
240.1
(-2.3)
P
176.2
(-2.7)
P
508
(-0.9)
P
803.7
(0.7)
P
1230.7
(3)
P
1113
C 203.6
(-3)
P
273.5
(-2.7)
P
284.2
(-2.6)
P
540.8
(-1.4)
P
850.6
(0)
P
1478.8
(3)
P
1275
avr 182.2
(-3)
259.7
(-2.6)
218.2
(-2.8)
557
(-1.3)
802.1
(-0.1)
1469.5
(3)
1287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 395
1 2 3 4 range
A 23.2
(-3)
P
103.8
(-1)
P
96.1
(-1.2)
P
264.9
(3)
P
242
B 16.1
(-3)
A
122.9
(-1.4)
P
88.2
(-1.9)
P
410.7
(3)
P
395
C 17.4
(-3)
M
125.7
(-0.5)
P
131.5
(-0.3)
P
273.1
(3)
P
256
avr 18.9
(-3)
117.5
(-1)
105.3
(-1.3)
316.2
(3)
297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 454
1 2 3 4 5 6 range
A 41.6
(-3)
P
94.5
(-2.1)
P
42.3
(-3)
P
157.8
(-1.1)
P
227
(-0)
P
413.7
(3)
P
372
B 40.9
(-3)
P
79.9
(-2.4)
P
42.8
(-3)
P
134.5
(-1.7)
P
326.5
(1.1)
P
458.9
(3)
P
418
C 75.5
(-3)
P
83.5
(-2.8)
P
72.3
(-3)
P
108.8
(-2.5)
P
275.3
(-0.1)
P
495
(3)
P
423
avr 52.7
(-3)
86
(-2.5)
52.5
(-3)
133.7
(-1.8)
276.3
(0.3)
455.9
(3)
403
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180704_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18260
Sequence Type Exemplar sequence
Representative Public ID F56C3.9 NCBI
Target Description F56C3.9 /REP_DB=WormBase Gene ID /WP=CE17900 /TR=O61761 /GB=AAC17009.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075857(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_075857 NCBI Caenorhabditis elegans F56C3.9 (F56C3.9) mRNA, complete cds. 11/11 None
GENEFINDER00000017317 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1391916:1393982:-1 11/11 None
F56C3.9 ENSEMBL cdna:known chromosome:CEL140:X:1391393:1393986:-1 gene:F56C3.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017310 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1391915-1393982(-) 99.84 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C3.9
Entrez Gene 186367 Entrez gene
SwissProt O61761 EMBL-EBI
WormBase CE17900 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17009 Hypothetical protein F56C3.9 [Caenorhabditis elegans] ref|NP_508258.1| F56C3.9 [Caenorhabditis elegans] 1.0E-117
blast CAA91989 Hypothetical protein F47B10.9 [Caenorhabditis elegans] ref|NP_509824.1| F47B10.9 [Caenorhabditis elegans] 9.0E-75
blast CAE70795 Hypothetical protein CBG17553 [Caenorhabditis briggsae] 5.0E-63
Sequence
Target Sequence
>C. ELEGANS:180704_AT
gcacatgttctccactgaaactgctcttcggaaattccaaatcaatactcaatccgacac
aatttacgtgaacctcaactacctggcagagctctccgagtattttcatatactacgcac
tggcttctactccgaaatgacagctgagaaagttaatttgaatgatgtttttgcagagga
tctagtagtttttctgtcatatgtgtgcccagatggttttgaatttgacagaactattaa
tcaacataacatcacaccactagtatatttctcggaccgcctcgtcttcccgtgggttaa
acgggaagttcacaagtatttaaatagtgaagccttccaaaacgaaatatatgacaccga
gttgttggtccaactttgctacctacttcacagtcagaattacagcgaaattgacgtggt
tttcaaaaaaatcgcgctcattgataacccgttagttgtggataggcttgtacaagaaat
cacggattcagatgttcagtcgtttttcacaaagaagattttgcaatatagaccgtatac
cgagaagccacggccacaaatgttctttg


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GCACATGTTCTCCACTGAAACTGCT 121 317 30 Antisense
TGAACCTCAACTACCTGGCAGAGCT 473 573 98 Antisense
GGCAGAGCTCTCCGAGTATTTTCAT 225 537 114 Antisense
ATATACTACGCACTGGCTTCTACTC 61 19 137 Antisense
AGTTTTTCTGTCATATGTGTGCCCA 574 61 216 Antisense
AATCAACATAACATCACACCACTAG 634 169 268 Antisense
CCACTAGTATATTTCTCGGACCGCC 41 273 286 Antisense
GACACCGAGTTGTTGGTCCAACTTT 74 367 382 Antisense
TTTGCTACCTACTTCACAGTCAGAA 585 667 404 Antisense
AAATCGCGCTCATTGATAACCCGTT 60 119 458 Antisense
AAGCCACGGCCACAAATGTTCTTTG 56 147 574 Antisense
Sequence Source Affymetrix Proprietary Database