[Home] | [Total List]

[180702_at]

Description Y51A2B.2 /REP_DB=WormBase Gene ID /WP=CE16656 /TR=O45957 /GB=CAA16393.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 14.7
(-1.9)
A 		55.2
(3)
A 		5.5
(-3)
A 		7.1
(-2.8)
A 		50
B 37.8
(3)
A 		15.8
(-0.9)
A 		18.8
(-0.4)
A 		4
(-3)
A 		34
C 18.4
(3)
A 		5.7
(-1.9)
A 		2.9
(-3)
A 		5.1
(-2.1)
A 		16
avr 23.6
(2.4) 		25.6
(3) 		9.1
(-1.9) 		5.4
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 6.5
(-1.5)
A 		4.1
(-2.3)
A 		18.9
(3)
A 		16.1
(2)
A 		13.7
(1.1)
A 		2.3
(-3)
A 		17
B 3.5
(-3)
A 		13.4
(-1.7)
A 		47.7
(3)
A 		13.9
(-1.6)
A 		20
(-0.8)
A 		34
(1.1)
A 		44
C 25.1
(3)
A 		21.2
(1.9)
A 		10.4
(-1.1)
A 		18
(1)
A 		3.5
(-3)
A 		21.1
(1.9)
A 		22
avr 11.7
(-3) 		12.9
(-2.5) 		25.7
(3) 		16
(-1.2) 		12.4
(-2.7) 		19.1
(0.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.3
(-0.7)
A 		12
(3)
A 		1.4
(-2.8)
A 		1
(-3)
A 		11
B 12
(3)
A 		3.9
(-1.3)
A 		4.4
(-1.1)
A 		0.8
(-3)
A 		11
C 6.1
(3)
A 		1.6
(-2.2)
A 		1
(-2.9)
A 		0.9
(-3)
A 		5
avr 7.8
(3) 		5.8
(1.3) 		2.3
(-1.8) 		0.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-2)
A 		1.5
(-1.5)
A 		4.1
(3)
A 		4.1
(3)
A 		4.1
(3)
A 		0.6
(-3)
A 		4
B 1.2
(-3)
A 		4.4
(-1.3)
A 		11.6
(2.4)
A 		3.7
(-1.7)
A 		8.1
(0.6)
A 		12.7
(3)
A 		12
C 9.3
(3)
A 		6.5
(1)
A 		2.6
(-1.9)
A 		3.6
(-1.2)
A 		1.1
(-3)
A 		7.1
(1.4)
A 		8
avr 3.9
(-2.8) 		4.1
(-2.4) 		6.1
(1.6) 		3.8
(-3) 		4.4
(-1.8) 		6.8
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180702_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13157
Sequence Type Exemplar sequence
Representative Public ID Y51A2B.2 NCBI
Target Description Y51A2B.2 /REP_DB=WormBase Gene ID /WP=CE16656 /TR=O45957 /GB=CAA16393.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075193 NCBI Caenorhabditis elegans Y51A2B.2 (Y51A2B.2) mRNA, complete cds. 11/11 None
GENEFINDER00000034650 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18375697:18379329:1 11/11 None
Y51A2B.2 ENSEMBL cdna:known chromosome:CEL140:V:18376823:18379329:1 gene:Y51A2B.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034637 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18376822-18379329(+) 99.04 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51A2B.2
Entrez Gene 190127 Entrez gene
SwissProt O45957 EMBL-EBI
WormBase CE16656 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16393 Hypothetical protein Y51A2B.2 [Caenorhabditis elegans] ref|NP_507594.1| Y51A2B.2 [Caenorhabditis elegans] 0.0
blast CAA16393 Hypothetical protein Y51A2B.2 [Caenorhabditis elegans] ref|NP_507594.1| Y51A2B.2 [Caenorhabditis elegans] 1.0E-160
blast AAB88362 Hypothetical protein F58F6.6 [Caenorhabditis elegans] ref|NP_500067.1| F58F6.6 [Caenorhabditis elegans] 1.0E-139
blast AAB52299 Hypothetical protein ZC196.9 [Caenorhabditis elegans] ref|NP_505246.1| ZC196.9 [Caenorhabditis elegans] 1.0E-138
blast AAB52299 Hypothetical protein ZC196.9 [Caenorhabditis elegans] ref|NP_505246.1| ZC196.9 [Caenorhabditis elegans] 1.0E-120
blast AAB88362 Hypothetical protein F58F6.6 [Caenorhabditis elegans] ref|NP_500067.1| F58F6.6 [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 1.3E-86
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 1.3E-86
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507594.1 8 27-49,64-86,106-128,148-170,190-212,260-282,295-317,332-351
Y51A2B.2 8 27-49,64-86,106-128,148-170,190-212,260-282,295-317,332-351
GENEFINDER00000034650 7 212-229,264-286,306-328,348-370,418-440,453-475,490-509
Sequence
Target Sequence 
>C. ELEGANS:180702_AT
ttttctacggaacttgactgagcagttatttgagtccaaaataatatacatttggctggc
aagtatatacattttctcgtttggtgtagaatttacattaatgatttcaaattgtcaata
tagatttggggaaactgcttcgggaaaatattcgggaaattctggaaaatatcaactaat
ttgtgaaactgttggttatgggaatattattatttcaatggcaacaccggctggagttca
actaatggaaactgttcttcaaattggtataccgatatttatattatgtatatattttgc
aataatcacaaaaatagtatctatgaaaggaagtacactgagcaaaaatgaaactttatt
tctgaaacaagctatgtttgtttttattattttccaggcatcgtcttgtgtatttttatt
tgctcaatctgtgcaaattactaatgtcggagcttttctggtcaagcggtttgttaacac
gatggaaatacttgccggagctgccacaccttcatttttcttcctcacgtcaaaagaaat
acgaaaactgatttctactaaagtttcagctgtcagttcacagggatcgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTACGGAACTTGACTGAGCAG 80 667 540 Antisense
TAGATTTGGGGAAACTGCTTCGGGA 171 651 660 Antisense
ATTTCAATGGCAACACCGGCTGGAG 123 15 751 Antisense
GCAACACCGGCTGGAGTTCAACTAA 306 319 760 Antisense
GTTTTTATTATTTTCCAGGCATCGT 164 449 919 Antisense
TCCAGGCATCGTCTTGTGTATTTTT 395 587 932 Antisense
ACTAATGTCGGAGCTTTTCTGGTCA 330 101 979 Antisense
GGTCAAGCGGTTTGTTAACACGATG 673 499 999 Antisense
CATTTTTCTTCCTCACGTCAAAAGA 224 61 1052 Antisense
GATTTCTACTAAAGTTTCAGCTGTC 130 429 1089 Antisense
AGCTGTCAGTTCACAGGGATCGTCG 165 79 1107 Antisense
Sequence Source Affymetrix Proprietary Database