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[180701_at]

Description T22B2.7 /REP_DB=WormBase Gene ID /WP=CE18276 /TR=O45190 /GB=AAC04445.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 65
(2.5)
A 		67.4
(3)
A 		40.4
(-2.5)
A 		37.9
(-3)
A 		30
B 20.6
(-1.2)
A 		8
(-3)
A 		51
(3)
A 		43
(1.9)
A 		43
C 62.7
(3)
A 		24.1
(-1)
A 		4.2
(-3)
A 		37.3
(0.4)
A 		59
avr 49.4
(3) 		33.2
(-2.6) 		31.9
(-3) 		39.4
(-0.4) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 12.1
(-0.9)
A 		8.4
(-2.1)
A 		24.2
(3)
A 		10
(-1.6)
A 		12.5
(-0.8)
A 		5.5
(-3)
A 		19
B 7.1
(-3)
A 		43.8
(2.4)
A 		47.9
(3)
A 		42.4
(2.2)
A 		27.9
(0.1)
A 		38.1
(1.6)
A 		41
C 28.8
(-0.3)
A 		58.8
(3)
A 		5.9
(-2.8)
A 		4.2
(-3)
A 		23.9
(-0.8)
A 		33
(0.2)
A 		55
avr 16
(-3) 		37
(3) 		26
(-0.1) 		18.9
(-2.2) 		21.4
(-1.5) 		25.5
(-0.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 23.7
(3)
A 		14.6
(0)
A 		10.6
(-1.3)
A 		5.5
(-3)
A 		18
B 6.6
(-0.2)
A 		2
(-3)
A 		11.8
(3)
A 		9.2
(1.4)
A 		10
C 20.7
(3)
A 		6.9
(-1.3)
A 		1.4
(-3)
A 		6.3
(-1.5)
A 		19
avr 17
(3) 		7.8
(-2.5) 		7.9
(-2.5) 		7
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.2
(-1.7)
A 		3
(-0.5)
A 		5.3
(3)
A 		2.5
(-1.2)
A 		3.8
(0.8)
A 		1.3
(-3)
A 		4
B 2.5
(-3)
A 		14.6
(3)
A 		11.6
(1.5)
A 		11.2
(1.3)
A 		11.3
(1.4)
A 		14.2
(2.8)
A 		12
C 10.7
(0.5)
A 		17.9
(3)
A 		1.5
(-2.8)
A 		0.8
(-3)
A 		7.7
(-0.6)
A 		11
(0.6)
A 		17
avr 5.1
(-2.7) 		11.8
(3) 		6.1
(-1.9) 		4.8
(-3) 		7.6
(-0.6) 		8.8
(0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180701_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18263
Sequence Type Exemplar sequence
Representative Public ID T22B2.7 NCBI
Target Description T22B2.7 /REP_DB=WormBase Gene ID /WP=CE18276 /TR=O45190 /GB=AAC04445.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076274 NCBI Caenorhabditis elegans T22B2.7 (T22B2.7) mRNA, complete cds. 11/11 None
T22B2.7 ENSEMBL cdna:known chromosome:CEL140:X:3909278:3909638:-1 gene:T22B2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039186 2/11 Cross Hyb Matching Probes None
GENEFINDER00000039192 2/11 Cross Hyb Matching Probes None
SNAP00000040157 2/11 Cross Hyb Matching Probes None
SNAP00000039761 2/11 Cross Hyb Matching Probes None
SNAP00000029195 2/11 Cross Hyb Matching Probes None
K08B12.4 2/11 Cross Hyb Matching Probes None
C54F6.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3909278-3909639(-) 24.31 100.0
Public Domain and Genome References
Gene Title
Ensembl T22B2.7
Entrez Gene 188721 Entrez gene
SwissProt O45190 EMBL-EBI
WormBase CE18276 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04445 Hypothetical protein T22B2.7 [Caenorhabditis elegans] ref|NP_508675.1| T22B2.7 [Caenorhabditis elegans] 5.0E-42
Sequence
Target Sequence 
>C. ELEGANS:180701_AT
cctagtgcgatccacatccgatatggtttgatgtacctctttctctctcataccacgatg
aaggaatcggaaagtctcctcaagaatgtttatgattcacataaagccatggcaacggat
cctttccaaatcacccgtgagctgtcaaccacacttgggtcccgtcaaaccaacatcgta
caagattcagttaatacagggtggccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTAGTGCGATCCACATCCGATATG 271 269 22 Antisense
GCGATCCACATCCGATATGGTTTGA 134 291 28 Antisense
ATGGTTTGATGTACCTCTTTCTCTC 462 51 44 Antisense
GGAATCGGAAAGTCTCCTCAAGAAT 460 533 84 Antisense
AAGTCTCCTCAAGAATGTTTATGAT 607 157 93 Antisense
CATAAAGCCATGGCAACGGATCCTT 484 211 121 Antisense
CTTTCCAAATCACCCGTGAGCTGTC 499 223 143 Antisense
CAAATCACCCGTGAGCTGTCAACCA 702 191 148 Antisense
TCCCGTCAAACCAACATCGTACAAG 372 595 181 Antisense
AACCAACATCGTACAAGATTCAGTT 487 147 189 Antisense
GATTCAGTTAATACAGGGTGGCCCA 153 425 205 Antisense
Sequence Source Affymetrix Proprietary Database