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[180699_at]

Description F41A4.2 /REP_DB=WormBase Gene ID /WP=CE17818 /TR=O61835 /GB=AAC17539.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 22      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 183.2
(3)
A 		48.4
(-1.8)
A 		15.1
(-3)
A 		125.8
(1)
A 		168
B 71.1
(0.7)
P 		18.8
(-3)
A 		60.4
(-0)
A 		103.3
(3)
A 		85
C 145.5
(1.8)
P 		86.5
(-0.6)
A 		25.5
(-3)
A 		175.4
(3)
M 		150
avr 133.3
(2.9) 		51.2
(-2) 		33.7
(-3) 		134.8
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 233.1
(3)
A 		115
(-0.4)
M 		90.1
(-1.1)
A 		116.3
(-0.4)
A 		24.3
(-3)
A 		24.9
(-3)
A 		209
B 218.6
(3)
P 		129.8
(0)
P 		133.7
(0.2)
A 		67.3
(-2)
A 		75.1
(-1.8)
A 		38
(-3)
A 		181
C 180.5
(3)
P 		145.3
(1.3)
A 		135
(0.8)
A 		93.7
(-1.2)
A 		83.9
(-1.7)
A 		56.8
(-3)
A 		124
avr 210.7
(3) 		130
(0.2) 		119.6
(-0.2) 		92.4
(-1.2) 		61.1
(-2.3) 		39.9
(-3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 66.7
(3)
A 		10.5
(-2.4)
A 		3.9
(-3)
A 		18.4
(-1.6)
A 		63
B 22.7
(3)
P 		4.6
(-3)
A 		14
(0.1)
A 		22
(2.8)
A 		18
C 48.2
(3)
P 		24.9
(-0.6)
A 		8.9
(-3)
A 		29.6
(0.2)
M 		39
avr 45.9
(3) 		13.3
(-2.3) 		8.9
(-3) 		23.3
(-0.7) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 43
(3)
A 		40.9
(2.7)
M 		19.6
(-0.8)
A 		29.5
(0.8)
A 		7.3
(-2.8)
A 		6.1
(-3)
A 		37
B 76
(3)
P 		43.2
(-0.2)
P 		32.5
(-1.2)
A 		17.8
(-2.7)
A 		30.5
(-1.4)
A 		14.2
(-3)
A 		62
C 66.9
(3)
P 		44.3
(0.2)
A 		34.4
(-1.1)
A 		18.8
(-3)
A 		27.1
(-2)
A 		19
(-3)
A 		48
avr 62
(3) 		42.8
(0.6) 		28.8
(-1.1) 		22
(-1.9) 		21.6
(-2) 		13.1
(-3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10697
Sequence Type Exemplar sequence
Representative Public ID F41A4.2 NCBI
Target Description F41A4.2 /REP_DB=WormBase Gene ID /WP=CE17818 /TR=O61835 /GB=AAC17539.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000014996 ENSEMBL cdna:SNAP chromosome:CEL140:IV:689453:698404:-1 None
GENEFINDER00000015013 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:689456:698404:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:688385-689618(-) 100.0 100.0
chrIV:688845-689720(-) 74.46 74.46
chrIV:691293-692168(-) 74.04 74.04
chrIV:688953-689822(-) 73.69 73.69
chrIV:690279-691148(-) 73.69 73.69
chrIV:691395-692270(-) 73.95 73.95
chrIV:693738-695429(-) 74.21 74.21
chrIV:690375-696652(-) 74.21 74.21
chrIV:689967-690842(-) 73.86 73.86
chrIV:689763-690638(-) 73.78 73.78
chrIV:690783-691658(-) 73.78 73.78
chrIV:694350-695225(-) 73.78 73.78
chrIV:689055-689924(-) 73.44 73.44
chrIV:696185-698182(-) 73.95 73.95
chrIV:693129-694511(-) 73.86 73.86
chrIV:692721-693441(-) 60.5 60.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE65648 Hypothetical protein CBG10706 [Caenorhabditis briggsae] 0.0
blast E88632 protein F41A4.2 [imported] - Caenorhabditis elegans pir||T33133 hypothetical protein F41A4.2 - Caenorhabditis elegans (fragment) 1.0E-171
blast CAE73749 Hypothetical protein CBG21280 [Caenorhabditis briggsae] 1.0E-144
Sequence
Target Sequence 
>C. ELEGANS:180699_AT
attcccaaactatcaatcgttcgacatatcaaggtggagttggtgataggtcaaatataa
tcaagcatgggacgactcttgaattcggatcagggaaagtgacagatcaatccgtatcaa
gattgacatacacccaatttcccatcgaacgaatgtcattgtcagttccagtggaaaagt
ggatcactgcaggaatgtcgtttccaacggagtacctgactgaacaaaaaagctcattcc
gtccgaaaccggccaactcagagtgcccagctgttcgtatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCCAAACTATCAATCGTTCGAC 168 9 851 Antisense
GGGACGACTCTTGAATTCGGATCAG 651 493 919 Antisense
GAAAGTGACAGATCAATCCGTATCA 343 361 945 Antisense
GATTGACATACACCCAATTTCCCAT 691 433 971 Antisense
ACCCAATTTCCCATCGAACGAATGT 3 21 982 Antisense
AATGTCATTGTCAGTTCCAGTGGAA 596 163 1002 Antisense
TGGATCACTGCAGGAATGTCGTTTC 223 551 1030 Antisense
GTCGTTTCCAACGGAGTACCTGACT 311 473 1047 Antisense
GAACAAAAAAGCTCATTCCGTCCGA 308 351 1072 Antisense
CGAAACCGGCCAACTCAGAGTGCCC 402 249 1094 Antisense
TCAGAGTGCCCAGCTGTTCGTATAG 10 625 1108 Antisense
Sequence Source Affymetrix Proprietary Database